**New Features & Updates**
**Error Handling Enhancements:**
The process now saves partial results to the output in case of an error, ensuring minimal data loss.
A reference CSV file is also saved to maintain detailed information about the process.
Basecalling Improvements:
All basecalled reads are now stored, providing a comprehensive dataset for future reference and analysis.
**Variant Calling Enhancements:**
**Updated the variant calling code to include:**
Insertions
Deletions
**Benefits:**
Improved reliability and traceability in case of process interruptions.
Enhanced variant detection capabilities, offering broader analysis insights.
Better record-keeping for reproducibility and future reviews.