Lfpy

f41451d version file
a5ee010 fixed brunel example w. nest 2.20 and lfpy 2.1
ac5b452 fix h5py deprecation warning
b99c00b h5py deprecated value attribute
1a6d21e updated microcircuit examples with parameter th_spike_generator_times
22ba172 Merge branch 'LFPy_dev' into spikegens
4c19636 Merge branch 'master' into LFPy_dev
e10a665 couple of print statements
0f1bfb2 fixes for python2
410d6c0 fixed sim script and plotting for figure 13
6365e3d python3 and matplotlib fixes to figure-generating scripts
e154323 fix networkSimParams dict
ecc1168 ntasks = 400
9fdde2c fixed LFPy deprecated params
e165d8e fix
e0fa283 example slurm jobscript fix
47627a4 Merge branch 'LFPy_dev' of github.com:espenhgn/hybridLFPy into LFPy_dev
862c3c8 fixes when NEURON is compiled with MPI
aebe951 python 3 fix
c38bdf3 removed mention of arXiv
42d382d updated README with correct citation
ab0d6b9 integer division
a440c0a close figs after file write
e483abc closing figures after writing files
de7e5b6 k_yXL must be integer
c827d77 fixed issue in gdf module w. Python 3
1207c25 minor fix w. python 3
5c9ef00 converted codes to Python 3.x
8759fb3 adapted cellParams dict to LFPy v.2
40a21f5 fixed g_pas values
4bc1ee2 use Agg as matplotlib backend if there is no DISPLAY env var
0a56d10 fullscale sim
a86aedf renamed test function, fixed tests
693fb75 adapt hybrid scheme to future LFPy v2
f8bd64b timeres_python and timeres_NEURON renamed to dt in LFPy:dev
fdfafbd updated docstring and examples for new kwarg X for class CachedNetwork
01be39b introducing kwarg X for population names in CachedNetwork classes
8407b0c dummy network spikes using poisson generators
c966373 nrnivmodl
3c5a534 removed .DS_Store files
8cc195c writing all figure files to root folder of example
20f93be nothing
0c5f2e2 number of simulation output path fixes
c223fdc readme updates
3ecdab0 script to write and submit Slurm jobscripts to cluster que added
a425255 added a COMM.Barrier() before trying to merge gdf files, some cleanup
314dfac dont need this file to be executable
80ae14b added files producing figures in Hagen et al, accepted in Cerebral Cortex
813879a can now set spike sequences explicitly for each TC neuron

What's Changed
* Python 3.7-3.10; updated citation by espenhgn in https://github.com/LFPy/LFPy/pull/407
* Update tests for LFPykitmaster, bump version to 2.3.dev, by espenhgn in https://github.com/LFPy/LFPy/pull/408
* Minor example fixes by espenhgn in https://github.com/LFPy/LFPy/pull/409
* Fix Network MPI issue by espenhgn in https://github.com/LFPy/LFPy/pull/411
* Fix crash with Neuron 8.1; improved Cell.get_idx_parent_children method by espenhgn in https://github.com/LFPy/LFPy/pull/415
* set `Cell.arc3d` if `pt3d==True` by espenhgn in https://github.com/LFPy/LFPy/pull/419
* New LFPy logo, some docstring fixes by espenhgn in https://github.com/LFPy/LFPy/pull/421
* removed deprecated MEG class by espenhgn in https://github.com/LFPy/LFPy/pull/422
* fixed _set_*_recorders use of dt by espenhgn in https://github.com/LFPy/LFPy/pull/425
* runtime compile of NMODL files by espenhgn in https://github.com/LFPy/LFPy/pull/427
* never close stale issues/PRs by espenhgn in https://github.com/LFPy/LFPy/pull/432
* Get rid of package dependency on `mpi4py` by espenhgn in https://github.com/LFPy/LFPy/pull/433
* faster `InfiniteHomogeneousVolCondMEG.calculate_H_from_iaxial` method by espenhgn in https://github.com/LFPy/LFPy/pull/437
* Prep LFPy-2.3 release by espenhgn in https://github.com/LFPy/LFPy/pull/439
* bump LFPy-2.3rc0 -> 2.3 by espenhgn in https://github.com/LFPy/LFPy/pull/441


**Full Changelog**: https://github.com/LFPy/LFPy/compare/v2.2.5...v2.3

What's Changed
* Python 3.7-3.10; updated citation by espenhgn in https://github.com/LFPy/LFPy/pull/407
* Update tests for LFPykitmaster, bump version to 2.3.dev, by espenhgn in https://github.com/LFPy/LFPy/pull/408
* Minor example fixes by espenhgn in https://github.com/LFPy/LFPy/pull/409
* Fix Network MPI issue by espenhgn in https://github.com/LFPy/LFPy/pull/411
* Fix crash with Neuron 8.1; improved Cell.get_idx_parent_children method by espenhgn in https://github.com/LFPy/LFPy/pull/415
* set `Cell.arc3d` if `pt3d==True` by espenhgn in https://github.com/LFPy/LFPy/pull/419
* New LFPy logo, some docstring fixes by espenhgn in https://github.com/LFPy/LFPy/pull/421
* removed deprecated MEG class by espenhgn in https://github.com/LFPy/LFPy/pull/422
* fixed _set_*_recorders use of dt by espenhgn in https://github.com/LFPy/LFPy/pull/425
* runtime compile of NMODL files by espenhgn in https://github.com/LFPy/LFPy/pull/427
* never close stale issues/PRs by espenhgn in https://github.com/LFPy/LFPy/pull/432
* Get rid of package dependency on `mpi4py` by espenhgn in https://github.com/LFPy/LFPy/pull/433
* faster `InfiniteHomogeneousVolCondMEG.calculate_H_from_iaxial` method by espenhgn in https://github.com/LFPy/LFPy/pull/437
* Prep LFPy-2.3 release by espenhgn in https://github.com/LFPy/LFPy/pull/439


**Full Changelog**: https://github.com/LFPy/LFPy/compare/v2.2.5...v2.3rc0

Release notes
This is the 6th maintenance release for LFPy-2.2

What's Changed
* Python 3.7-3.10; updated citation by espenhgn in https://github.com/LFPy/LFPy/pull/407
* fix Neuron 8.1 issue, version bump by espenhgn in https://github.com/LFPy/LFPy/pull/417


**Full Changelog**: https://github.com/LFPy/LFPy/compare/v2.2.5...v2.2.6

Release notes
This is the 5th maintenance release for LFPy-2.2. This version expects `LFPykit>=0.4,<0.5`

What's Changed
* Replace Lintly action by espenhgn in https://github.com/LFPy/LFPy/pull/399
* fix download of Hay2011 model codes by espenhgn in https://github.com/LFPy/LFPy/pull/403
* bump version to 2.2.5 by espenhgn in https://github.com/LFPy/LFPy/pull/405


**Full Changelog**: https://github.com/LFPy/LFPy/compare/v2.2.4...v2.2.5

Release notes
This is the 4th maintenance release for LFPy-2.2.

What's Changed
* Implementation of Network.enable_extracellular_stimulation() by Alexis-Melot in https://github.com/LFPy/LFPy/pull/373
* Updated Dockerfile, pinning versions, linting by espenhgn in https://github.com/LFPy/LFPy/pull/376
* add CITATION.cff file by espenhgn in https://github.com/LFPy/LFPy/pull/377
* Update CITATION.cff by espenhgn in https://github.com/LFPy/LFPy/pull/379
* fix MEG.calculate_H_from_iaxial method and docstring by espenhgn in https://github.com/LFPy/LFPy/pull/381
* add py=3.10 to build matrix by espenhgn in https://github.com/LFPy/LFPy/pull/382
* Incorporate InfiniteHomogeneousVolCondMEG and SphericallySymmetricVolCondMEG by espenhgn in https://github.com/LFPy/LFPy/pull/383
* remove NSG example files by espenhgn in https://github.com/LFPy/LFPy/pull/384
* Remove mazzoni example files by espenhgn in https://github.com/LFPy/LFPy/pull/385
* remove use of <morphology>.rot files by espenhgn in https://github.com/LFPy/LFPy/pull/387
* Require `LFPykit>=0.4` by espenhgn in https://github.com/LFPy/LFPy/pull/390
* `%pylab inline` no longer an option by espenhgn in https://github.com/LFPy/LFPy/pull/391
* fix test function by espenhgn in https://github.com/LFPy/LFPy/pull/395
* use st.truncnorm for delays and multapses. formatting by espenhgn in https://github.com/LFPy/LFPy/pull/392
* bump version to 2.2.4 by espenhgn in https://github.com/LFPy/LFPy/pull/393

New Contributors
* Alexis-Melot made their first contribution in https://github.com/LFPy/LFPy/pull/373

**Full Changelog**: https://github.com/LFPy/LFPy/compare/v2.2.3...v2.2.4