Libsonata

Latest version: v0.1.29

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0.1.26

Added:
* Simulation config: synapse_replay input files must be .h5 (351)
* SimulationConfig: Adds "represents_physical_electrode" field in "inputs" section (354)

Fixed:
* Update HighFive SHA to `2.9.0`. (343)
* Make documentation available for Python API (345)
* Build static macos and linux wheels (355)

0.1.25

Added:
- Implement fall-back for `make_collective_reader`. (326)
- Inject dataset reading via `Hdf5Reader`. (307)
- Use `using Range = std::array<Value, 2>`. (319)

Fixed:
- SimulationConfig: `spike_threshold` is float (340)
- Check more variants of CMake invocations. (333)
- Remove `CMAKE_SKIP_INSTALL_ALL_DEPENDENCY`. (336)
- add SimulationConfig to `__all__` (339)
- Make sure defaults for condition blocks and others are applied (338)
- Allow `sonata::sonata_{shared,static}`. (335)
- Update `pybind11==2.11.1`. (332)
- Refactor `edge_index::resolve`. (314)
- Refactor `_readSelection`. (315)
- Prevent pytest from picking up pybind11 tests. (320)
- update to require using cmake 3.16 (321)
- test for completely empty datasets (281)
- Update HighFive to v2.8.0. (318)
- be neighborly, do not use `using` in headers (316)
- work around brew erroring in github actions (317)
- Move `Selection` to its own header. (306)
- Simplify HighFive usage. (304)
- Simplify single group check. (303)
- Optimize loading `?fferent_edges`. (298)
- Allow disabling coverage an 'Debug'. (299)
- Simplify `Selection::Selection`. (300)
- Use `RawIndex = std::vector<std::array<.., 2>>`. (294)

0.1.24

- small cosmetic fixes/py 3.12 wheels (290)
- Fix toJSON incorrect empty, node_id and compound problems (289)
- NodeSet `update`: merge NodeSet objects together (283)

0.1.23

- Create non-tuple Spike Report access (285)
- Add 'lfp' report type and 'electrodes_file' field (271)
- Add missing reversal property of shotnoise family (284)
- Move std::vector methods above scalar methods in bindings (280)

0.1.22

- bump HighFive to v2.7.1 (278)
- Extend metadata type to be int, float, bool and string (277)
- Prevent node_set materialization for `libary` with integers (276)

0.1.21

- SimulationConfig: set the default value of random_seed in inputs to None (270)
- Allow empty arrays in nodesets (272)
- implement spec for population properties for vasculature, astrocytes and endfeet (275)

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