Maboss

- Now automatically producing arm64 libMaBoSS
- Added more error checking to cMaBoSS
- Fix support of unary boolean operator in SBML-qual
- MaBoSS MPI version now with a .MPI suffix
- MaBoSS docker image now available via GitHub packages
- Code cleanup

- Adding compatibility with python 3.12 in cMaBoSS
- Updating libSBML version to 5.20.2

This release comes with two performance improvements :
- Evaluation of boolean formulas allowing for short-circuiting of boolean expressions (11), thanks exaexa !
- nodesTransitionRates is now represented as a vector, initialized only once, thanks PopCoE !

Also included is the beta release of PopMaBoSS, a new multicellular pathway modeling framework (thanks vincent-noel , gautierstoll eviara). Manuscript is in preparation !
To test it, run :

cd engine/src
make popmaboss


Examples are available in the `engine/examples/popmaboss` directory.

This release also include new pypi and conda packages for cmaboss with python 3.11.

- Fix Mersenne Twister pseudo-random number generator support
- Fix BNet support
- Fix compilation of cmaboss without SBML support
- New tests and deployment architecture
- Now using cibuildwheel to build cmaboss wheels
- Added cmaboss support for macosx ARM64

Fix memory bug in MaBEstEngine and EnsembleEngine destructors.

This new version comes with support for parallelization using MPI. This allows the simulation to run on multiple machines and to split the computational load.
To compile MaBoSS with MPI support, use :

make MPI_COMPAT=1 CXX=mpic++ install


More information can be found on the new tutorial on Montagud's newly released Prostate model : https://github.com/sysbio-curie/MaBoSS-env-2.0/tree/master/tutorial/Montagud_2022_Prostate_Cancer