MACH2 is an upgraded version of [MACHINA](https://github.com/raphael-group/machina), [(El-Kebir et. al.)](https://www.nature.com/articles/s41588-018-0106-z). MACH2-Viz visualizes the solution space for algorithms running the parsimonious migration history problem with polytomy resolution. Solutions are generated via MACH2 (Roddur et. al.). MACH2-Viz also supports data from MACHINA or any cancer migration history inference software as long as the data can be compiled into valid JSON format for MACH2-Viz to parse.
- Explore the solution space of migration histories and clonal graphs inferred from the PMH/PMH-TR problem
- Compare solutions and find corresponding nodes
- Visualize polytomy resolution through examining corresponding nodes between unresolved and resolved clone trees
- Filter using the summary graph. Enforce known migrations and known absences of migrations.