Mcdc

Changing GPU runtime behavior to allow for code profiling for M&C 2025 papers

What's Changed
* Merge pull request 248 from CEMeNT-PSAAP/dev (Making dev up to date to main) by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/249
* GPU Sub-batching + Opt-in caching by braxtoncuneo in https://github.com/CEMeNT-PSAAP/MCDC/pull/250
* pyproject.toml for v0.11.1 by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/251
* v0.11.1 by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/252


**Full Changelog**: https://github.com/CEMeNT-PSAAP/MCDC/compare/v0.11.0...v0.11.1

- AMD and NVIDIA GPU functionalities 241 by braxtoncuneo.
- Improved CSG geometry modeling 222 by ilhamv: intersection, union, complement
- Reverse Polish Notation algorithm is used
- Cell input changes. Cell region is now defined with boolean operations of regions or surface halfspaces. Previously, it was defined as a list of surface halfspaces that were limited to intersection operation.
- Improved geometry tracking 238 by ilhamv: replace particle shifting with direction checking to treat spatial coincidences, refactor geometry-related source code to submodules, better coincident event treatment, better unit testing, non-stopping tally mesh
- Improved tally: refactor tally structure into long 1D array 227 and density score 245 by ilhamv, mesh tally decomposition 227 by alexandermote,
- Improved universe modeling 238 by ilhamv : universe rotation and translation, universe-filled cell
- Add and set splitting roulette as default population control (242) for complete reproducibility on GPU runs due to concurrent tracking of the secondaries by braxtoncuneo and ilhamv.
- iQMC update 223 by spasmann: batching algorithm, improved readability and maintanibility
- Visualizer update
- A 2D lightweight visualizer is introduced 240 by ilhamv .
- The 3D Ngsolve visualizer is removed 245. It is and will be replaced with alternatives that have fewer dependencies.
- Pre-commit hook for automatic black-styling
- The moving surface capability is temporarily removed (238). It will be better reimplemented in the next version.
- Verification test is moved (238) to https://github.com/CEMeNT-PSAAP/MCDC-VVP
- Having portability on CPUs, NVIDIA GPUs, and AMD GPUs, this version will be the first named version whose performance test results are recorded in https://github.com/CEMeNT-PSAAP/MCDC-VVP

What's Changed
* Update pyproject.toml by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/203
* iQMC Refactor by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/204
* Improving CSG and input cards by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/198
* Bug fix: particles sourced on cell boundaries by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/213
* Bug fix, continuous energy test, and file-based source test by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/215
* Added mpi4py.util.dtlib to docs MOCK_MODULES by clemekay in https://github.com/CEMeNT-PSAAP/MCDC/pull/219
* Moving visualizer to a sub package for mac support by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/221
* Refactor CSG tracking with Reverse Polish Notation by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/222
* Decomposed mesh tallies when domain decomposition is active by alexandermote in https://github.com/CEMeNT-PSAAP/MCDC/pull/212
* Merge main into dev by clemekay in https://github.com/CEMeNT-PSAAP/MCDC/pull/226
* Remove DSM temporarily by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/233
* Remove particle tracker temporarily by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/234
* Refactor local arrays and objects by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/229
* Refactor geometry by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/235
* Add a pre-commit hook (Black styling) by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/228
* iQMC Batch Method by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/223
* Adding 3D tally recomposition and 3D Domain Decomposition test by alexandermote in https://github.com/CEMeNT-PSAAP/MCDC/pull/230
* add version to __init__ and hdf5 output by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/239
* Update geometry and mesh by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/238
* Merge the new tally structure by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/227
* AMD GPU (ROCM) Interoperability by braxtoncuneo in https://github.com/CEMeNT-PSAAP/MCDC/pull/241
* Add a lightweight 2D visualizer. by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/240
* Add splitting roulette population control by braxtoncuneo in https://github.com/CEMeNT-PSAAP/MCDC/pull/242
* Update example by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/245
* Updating metadata for version release by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/247

New Contributors
* alexandermote made their first contribution in https://github.com/CEMeNT-PSAAP/MCDC/pull/212

**Full Changelog**: https://github.com/CEMeNT-PSAAP/MCDC/compare/v0.10.0...v0.11.0

**Full Changelog**: https://github.com/CEMeNT-PSAAP/MCDC/compare/v0.9.1...v0.10.0

Version release required for [JOSS approval](https://github.com/openjournals/joss-reviews/issues/6415)

- Adding more to docs
- Fixing a few examples
- Adding runtime warning for unconfigured continuous energy xsec library
- Fixing install script

What's Changed
* KN updates to JOSS paper by kyleniemeyer in https://github.com/CEMeNT-PSAAP/MCDC/pull/152
* Fixing capabilities on continuous energy mode by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/150
* Keep collision-inducing neutron alive when applicable. Update on tests. by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/154
* Adding Caching and a Debug Runtime Option by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/161
* Hotfix for install script by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/171
* Hotfixes for issues by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/175
* Add colorama mock for Sphinx by clemekay in https://github.com/CEMeNT-PSAAP/MCDC/pull/179
* Adding middle names to Joss paper by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/181
* adding dois, fixing in text bib refs by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/182
* Updating pyproject for v0.9.1 by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/183

New Contributors
* kyleniemeyer made their first contribution in https://github.com/CEMeNT-PSAAP/MCDC/pull/152

**Full Changelog**: https://github.com/CEMeNT-PSAAP/MCDC/compare/v0.9.0...v0.9.1

It has been a year since our last version release lots of things have changed

- Continious energy transport
- Bug fixes for HPC systems
- Adding a visualizer into the main branch
- Documentation
- Packaging with pypi
- various new iqmc methods
- Production of easy to use install scripts for HPC devlopment

What's Changed
* Continuous integration for unit tests on github v0.1 by northroj in https://github.com/CEMeNT-PSAAP/MCDC/pull/99
* Add Initial Condition Sampling by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/102
* Refactor of the event system by goodman17c in https://github.com/CEMeNT-PSAAP/MCDC/pull/97
* Add energy group grid to tally mesh by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/103
* iQMC Krylov Solvers by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/106
* Improvements to weight windows by goodman17c in https://github.com/CEMeNT-PSAAP/MCDC/pull/107
* update gitignore by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/110
* add cmd line options, add second-order sensitivity method by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/111
* minor update on input cards by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/112
* Move out tally bin reduction in history closeout (refactoring to help integration of harmonize) by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/113
* Local rng by braxtoncuneo in https://github.com/CEMeNT-PSAAP/MCDC/pull/114
* Minor update by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/115
* Refactoring loops by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/116
* move out iqmc sweep counter by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/117
* add batch loop for fixed source by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/118
* Parallelization of LDS and Additional Unit Tests by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/119
* update c5g7 examples by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/120
* remove crossing estimators by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/121
* minor updates by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/122
* debug parallel issue on source bank access by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/127
* Create installation script and documentation website by clemekay in https://github.com/CEMeNT-PSAAP/MCDC/pull/128
* Merging variance deconvolution feature into main. by clemekay in https://github.com/CEMeNT-PSAAP/MCDC/pull/130
* iQMC print statement refactor by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/132
* Reconfigure test by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/131
* update workflow by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/134
* small SEED_SPLIT_UQ bug fix by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/137
* iqmc source tilting and refactorization by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/140
* add iqmc mpi test to workflow by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/141
* Adding visulization (Merging 109) by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/143
* iQMC MPI Bug Fix by spasmann in https://github.com/CEMeNT-PSAAP/MCDC/pull/144
* Add continuous energy physics by ilhamv in https://github.com/CEMeNT-PSAAP/MCDC/pull/142
* Testing Refactor, New Documentaiton, & Cont Energy Xsec Config script by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/145
* Documentation and Testing by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/147
* Visualization Timescale and color fix. by RohanPankaj in https://github.com/CEMeNT-PSAAP/MCDC/pull/146
* Documentation and Packaging update (Pre mc/dc 0.0.9) by jpmorgan98 in https://github.com/CEMeNT-PSAAP/MCDC/pull/149

New Contributors
* northroj made their first contribution in https://github.com/CEMeNT-PSAAP/MCDC/pull/99
* braxtoncuneo made their first contribution in https://github.com/CEMeNT-PSAAP/MCDC/pull/114
* clemekay made their first contribution in https://github.com/CEMeNT-PSAAP/MCDC/pull/128
* RohanPankaj made their first contribution in https://github.com/CEMeNT-PSAAP/MCDC/pull/146

**Full Changelog**: https://github.com/CEMeNT-PSAAP/MCDC/compare/v0.1.0...v0.9.0