Mdmparis-defense-finder

This release adds AntiDefenseFinder option to detect anti-defense systems
* --antidefense to run AntiDefense models with DefenseFinder
* --antidefense-only to run only AntiDefense models
* Also add pandas posttreament

Minor release to fix some typo and hmm names. Fix issues https://github.com/mdmparis/defense-finder-models/issues/11 https://github.com/mdmparis/defense-finder-models/issues/12 https://github.com/mdmparis/defense-finder-models/issues/15

Also, we removed the profile CARD_NLR__Subtilase_long_new which was identical to the CARD_NLR__Subtilase_small_new one, because of a bug when building the profile. We will rebuild this profile in the next release.

Adding new defense systems.
Modification of some names.
Better detection of systems

This release fix the following

- bug with macsyfinder that is fixed but not yet deployed (https://github.com/gem-pasteur/macsyfinder/issues/69). So we pin the previous macsyfinder version that did not have the bug (v2.1.1 of macsyfinder).
- bug when input file is multiple nucleic fasta file (https://github.com/mdmparis/defense-finder/issues/48)

We added tests as well.

Modification of Lamassu-Fam profiles GA cut
Modification of Lamassu-Fam definition intergene space

Now user can input nucleotide fasta file (single or multi fasta). DF detects automatically what type of file is it and continues depending on the input.

The output files have been renamed to contain the name of the input file to prevent overwriting files.

Logging messages are added