Medcat

This release is mainly focused on fixing DeID models. This fix was supposed tom out in 1.13.1 but were accidentally omitted.

What's Changed
* CU-869671bn4: Update requirements to fix workflow issue due to mypy by mart-r in https://github.com/CogStack/MedCAT/pull/497
* CU-8696n7w95: Remove commented code to fix DeID (oversight in PR 490) by mart-r in https://github.com/CogStack/MedCAT/pull/502


**Full Changelog**: https://github.com/CogStack/MedCAT/compare/v1.13.1...v1.13.2

This PR is mostly designed to address a few issues related to MetaCAT (see 495).
But a few other changes were also pulled from the master class to fix previous issues and/or make sure the patch release is stable.

What's Changed
* CU-8695jwnjk: Fix description of an argument for --help to work in CLI by mart-r in https://github.com/CogStack/MedCAT/pull/484
* Pushing bug fix for metacat by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/487
* CU-8695uhe5n: Update docs dependency pins by mart-r in https://github.com/CogStack/MedCAT/pull/491
* CU-8695pvhfe fix usage monitoring for multiprocessing by mart-r in https://github.com/CogStack/MedCAT/pull/488
* CU-8695ucw9b deid transformers fix by mart-r in https://github.com/CogStack/MedCAT/pull/490
* CU-869637yfx: Pin spacy dependency to lower than 3.8 by mart-r in https://github.com/CogStack/MedCAT/pull/494
* MetaCAT fixes and upgrades by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/495

**Full Changelog**: https://github.com/CogStack/MedCAT/compare/v1.13.0...v1.13.1

**Full Changelog**: https://github.com/CogStack/MedCAT/compare/v1.12.1...v1.13.0

This PR is mostly designed to address a few issues related to MetaCAT (see 495).
But a few other changes were also pulled from the master class to fix previous issues and/or make sure the patch release is stable.

What's Changed
* CU-869588fdc: Bin blis to 1.0.0 by mart-r in https://github.com/CogStack/MedCAT/pull/471
* Fixing bug for metacat by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/474
* Use the loaded model hash for usage monitor instead of recalculating it by mart-r in https://github.com/CogStack/MedCAT/pull/477
* CU8695gyxrt CDB Merge Typo by adam-sutton-1992 in https://github.com/CogStack/MedCAT/pull/479
* Pushing bug fix for metacat by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/487
* CU-8695uhe5n: Update docs dependency pins by mart-r in https://github.com/CogStack/MedCAT/pull/491
* CU-8695ucw9b deid transformers fix by mart-r in https://github.com/CogStack/MedCAT/pull/490
* CU-869637yfx: Pin spacy dependency to lower than 3.8 by mart-r in https://github.com/CogStack/MedCAT/pull/494
* MetaCAT fixes and upgrades by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/495

**Full Changelog**: https://github.com/CogStack/MedCAT/compare/v1.12.1...v1.12.2

This patch release mostly addresses the `blis` (dependency) issue.
For some reason, a new version of `blis` is often automatically installed.
And that new version of `blis` depends on `numpy>=2`, which `medcat` is incompatible with.


What's Changed

- 471 CU-869588fdc: Bin blis to 1.0.0

**Full Changelog**: https://github.com/CogStack/MedCAT/compare/v1.12.0...v1.12.1

NOTE:
There's a few deprecated methods being removed in this version. Refer to 454.

What's Changed
* Relation extraction by vladd-bit in https://github.com/CogStack/MedCAT/pull/173
* CU-8694fae3r: Avoid publishing PyPI release when doing GH pre-releases by mart-r in https://github.com/CogStack/MedCAT/pull/424
* Merging changes from master to metacat_bert branch by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/431
* Adding Bert-style model for MetaCAT by shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/419
* CU-8694hukwm: Document the materialising of generator when multiproce… by mart-r in https://github.com/CogStack/MedCAT/pull/433
* CU-8694fk90t (almost) only primitive config by mart-r in https://github.com/CogStack/MedCAT/pull/425
* CU-8694gza88 Create codeql.yml by mart-r in https://github.com/CogStack/MedCAT/pull/434
* CU-8694mbn03: Remove the web app by mart-r in https://github.com/CogStack/MedCAT/pull/441
* CU-8694n48uw better deprecation by mart-r in https://github.com/CogStack/MedCAT/pull/443
* CU-8694pey4u: extract cdb load to cls method by tomolopolis in https://github.com/CogStack/MedCAT/pull/446
* CU-8694pey4u: missing extra config if passed in by tomolopolis in https://github.com/CogStack/MedCAT/pull/448
* CU-8694py1jr fix old config load with reg json by mart-r in https://github.com/CogStack/MedCAT/pull/449
* CU-8694vcvz7: Trust remote code when loading transfomers NER dataset by mart-r in https://github.com/CogStack/MedCAT/pull/453
* CU-8694gzbn3 k fold metrics by mart-r in https://github.com/CogStack/MedCAT/pull/432
* CU-8693n892x environment/dependency snapshots by mart-r in https://github.com/CogStack/MedCAT/pull/438
* CU-8694p8y0k deprecation GHA check by mart-r in https://github.com/CogStack/MedCAT/pull/445
* CU-8694u3yd2 cleanup name removal by mart-r in https://github.com/CogStack/MedCAT/pull/450
* CU-8694vte2g 1.12 depr removal by mart-r in https://github.com/CogStack/MedCAT/pull/454


**Full Changelog**: https://github.com/CogStack/MedCAT/compare/v1.11.0...v1.12.0