- Added new diversity metrics: Shannon, Gini-Simpson and Rao's quadratic entropy
- Changed the normalization method used to calculate diversity metrics
- Fixed various bugs related with calculation of transformations
- Change color of points (to gray) of shared metabolties in pairwise comparison graphs
- Fixed an issue regarding elemental and molecular composition going over or lower than 100%
v.0.2.2, 9/7/2021
- Fixed KEGG annotation not providing all compounds with the same exact molecular formula
v.0.2.3, 9/9/2021
- Fixed colors in elemental composition figure
v.0.2.4, 9/9/2021
- Fixed a bug where Cytoscape networks were not build directly with the -c option
v.0.2.5, 9/16/2021
- Fixed variable names not appearing in the upsetplot
v.0.2.6, 9/28/2021
- Fixed default transformation key
v.0.2.7, 10/13/2021
- Coordinates for the NMDS and PCA plots are now saved in csv files
v.0.2.8, 1/18/2022
- Added timer to MetaboDirect script
v.0.2.9, 1/18/2022
- Fixed timer to work in all cases
v.0.2.10, v.0.2.11 1/18/2022
- Fixed timer giving negative values
v.0.2.12, 1/18/2022
- Fixed timer not appearing when using -t option
v.0.3.1, 4/11/2022
- Added option to filter peaks that do not appear in multiple samples (option -p)
- Added option to change the error threshold that is accepted (option -e)
- Transformation network edges are not longer colored in order to improve speed and performance of this step
- Added Venn diagrams for the pairwise comparisons
v.0.3.2, 6/23/2022
- Fixed compatibility issues with new version of vegan
v.0.3.3, 11/2/2022
- Fixed Aromaticity index formula
v.0.3.4, 11/3/2022
- Fixed bug Aromaticity index formula
v.0.3.5, 2/14/2023
- Minor code updates
v.1.0.0, 11/2/2023
- Large changes to R scripts. Custom functions added to aid in readability
- Added a logger
- Added possibility to have additional elements
- MetaboDirect now supports other table formats
- Improved the compute time for KEGG annotation
v.1.0.1, 11/2/2023
- Fix error chemodiversity script
v.1.0.2, 11/8/2023
- Fix error chemodiversity script
v.1.0.3, 12/11/2023
- Add shape to ordination plots when 3 group variables are used
v.1.0.4, 01/08/2024
- Fix small bugs in custom functions
v.1.0.5, 01/23/2024
- Fix an error in the script of the KEGG Annotation Step
v.1.0.6, 01/23/2024
- Fix an error in the script of the KEGG Annotation Step
v.1.0.7, 01/24/2024
- Fix an error in the script of the KEGG Annotation Step