New command line options -added option '-r' to specify external RAPsearch v2.15 binary -removed options '-f' and '-c'; file formats and quality encodings are now always auto-detected -fixed option '-e' for just estimating AGS
Added new sequence parser -no longer uses BioPython for parsing FASTQ/A files -faster -solves Issue 4
1.0.7
-changed output file format -increased default reads sampled to 2 million -added calculation of genome equivalents -added support for multiple input files (ex: paired end reads) -fix bug in detecting duplicates -reporting database search errors -updated documentation -improved deletion of temporary files on error or keyboard interrupt
1.0.5
-Changed how MC handles FASTA/FASTQ records with invalid formatting. Program now exits and reports sequence that caused error. Previously, MC would end parsing file at the point error occurred and continue with program
1.0.4
-Updated README to provide better descriptions of parameters and usage suggestions -Program checks for input file -Program checks for problematic headers in FASTQ files -Added more info to command line parameters -Copyright updated
1.0.3
-Changed quiet flag to verbose flag -Made run_microbe_census.py executable -Added version flag (-V) -Removed dependency on pkg_resources
1.0.2
-Improved detection of quality score encoding -Fixed incompatibility with Python 2.6