Microsim

Latest version: v0.0.4

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0.0.4

What's Changed
* fix: fix for redhat by tlambert03 in https://github.com/tlambert03/microsim/pull/56


**Full Changelog**: https://github.com/tlambert03/microsim/compare/v0.0.3...v0.0.4

0.0.3

What's Changed
* feat: allow loading optical configs from fpbase, general refactor of optical configs by tlambert03 in https://github.com/tlambert03/microsim/pull/40
* ci(pre-commit.ci): autoupdate by pre-commit-ci in https://github.com/tlambert03/microsim/pull/42
* refactor: remove DataArray, use xarray directly, vendor xarray_jax from deepmind/graphcast by tlambert03 in https://github.com/tlambert03/microsim/pull/43
* Establish dimension conventions, pass dimensions through more explicitly by tlambert03 in https://github.com/tlambert03/microsim/pull/44
* docs: Overview of various stages. by tlambert03 in https://github.com/tlambert03/microsim/pull/46
* feat: add caching by tlambert03 in https://github.com/tlambert03/microsim/pull/41
* feat: add ndview convenience by tlambert03 in https://github.com/tlambert03/microsim/pull/49
* feat: add cosem models, downloading, caching, binning, and tests by tlambert03 in https://github.com/tlambert03/microsim/pull/50
* ci: try self-hosted for cupy by tlambert03 in https://github.com/tlambert03/microsim/pull/45
* build: pin numpy to <2 until next tensorstore release by tlambert03 in https://github.com/tlambert03/microsim/pull/51
* feat: support multi-channel, multi-fluorophore simulations by ashesh-0 in https://github.com/tlambert03/microsim/pull/35
* feat: pull neuron ground truths from allen brain by tlambert03 in https://github.com/tlambert03/microsim/pull/48
* fix: remove caching on bins by tlambert03 in https://github.com/tlambert03/microsim/pull/53
* feat: cosem Sample by tlambert03 in https://github.com/tlambert03/microsim/pull/18

New Contributors
* ashesh-0 made their first contribution in https://github.com/tlambert03/microsim/pull/35

**Full Changelog**: https://github.com/tlambert03/microsim/compare/v0.0.2...v0.0.3

0.0.2

What's Changed
* feat: swappable fft backends, including torch and jax by tlambert03 in https://github.com/tlambert03/microsim/pull/30
* feat: add emission event example, and add lifetime to state from fpbase, test examples by tlambert03 in https://github.com/tlambert03/microsim/pull/34
* feat: add direct from ground truth by tlambert03 in https://github.com/tlambert03/microsim/pull/32
* feat: establish some general Annotated[..., Validator()] patterns. add `Fluorophore.from_fpbase` by tlambert03 in https://github.com/tlambert03/microsim/pull/36
* feat: add pint quantities to more fields by tlambert03 in https://github.com/tlambert03/microsim/pull/37
* fix cupy by tlambert03 in https://github.com/tlambert03/microsim/pull/38


**Full Changelog**: https://github.com/tlambert03/microsim/compare/v0.0.1...v0.0.2

0.0.1

What's Changed
* use mypyc for bresenham by tlambert03 in https://github.com/tlambert03/microsim/pull/6
* update precommit by tlambert03 in https://github.com/tlambert03/microsim/pull/7
* Fix import and formatting issues in multiple files by tlambert03 in https://github.com/tlambert03/microsim/pull/11
* ci(dependabot): bump softprops/action-gh-release from 1 to 2 by dependabot in https://github.com/tlambert03/microsim/pull/13
* ci(dependabot): bump actions/setup-python from 4 to 5 by dependabot in https://github.com/tlambert03/microsim/pull/14
* ci(dependabot): bump codecov/codecov-action from 3 to 4 by dependabot in https://github.com/tlambert03/microsim/pull/15
* Reorganize code by tlambert03 in https://github.com/tlambert03/microsim/pull/12
* Smaller psf by tlambert03 in https://github.com/tlambert03/microsim/pull/16
* cosem and cleanup by tlambert03 in https://github.com/tlambert03/microsim/pull/17
* feat: use SimBaseModel and add float precision setting by tlambert03 in https://github.com/tlambert03/microsim/pull/19
* feat: cache psf by tlambert03 in https://github.com/tlambert03/microsim/pull/26
* ci(pre-commit.ci): autoupdate by pre-commit-ci in https://github.com/tlambert03/microsim/pull/24
* Update ci, prep for release to pypi by tlambert03 in https://github.com/tlambert03/microsim/pull/27
* feat: higher level psf caching by tlambert03 in https://github.com/tlambert03/microsim/pull/28

New Contributors
* tlambert03 made their first contribution in https://github.com/tlambert03/microsim/pull/6
* dependabot made their first contribution in https://github.com/tlambert03/microsim/pull/13
* pre-commit-ci made their first contribution in https://github.com/tlambert03/microsim/pull/24

**Full Changelog**: https://github.com/tlambert03/microsim/commits/v0.0.1

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