Miv-os

What's Changed

* Major rework in core operators and datatypes skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/204
- Includes pipeline, lazy generator runs, caching, and callback
* Underlying structure implementation is done. The remaining work is left to test and try on various experimental procedures.
* Reduced documentation to only includes the pages that support the current operator structure.

**Full Changelog**: https://github.com/GazzolaLab/MiV-OS/commits/v0.3.0-beta.0

What's Changed

Features

* Dynamic Time Warping for sorting and clustering by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/181
* Make `load_fragments` to be default behavior for `load` by eunice-chan in https://github.com/GazzolaLab/MiV-OS/pull/190
* Add more features for `miv.core.Spikestamps`: time-window view, first/last spikestamps, and spike counter

Documentation

* update raw-binary file pre-processing by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/191
* Update read_TTL_events guide by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/187
* how to use change-point detection algorithm by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/193

New Contributors

* eunice-chan made their first contribution in https://github.com/GazzolaLab/MiV-OS/pull/190

**Full Changelog**: https://github.com/GazzolaLab/MiV-OS/compare/v0.2.3...V0.2.4

What's Changed

Features

* Intan RHS data load module by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/179
* Support fragment load for large file size.
* MiV native `miv.Spikestamps` datatime with extended 'merge' feature.
* Support for OpenEphys version 0.5.4 file structure.
* Add array type return for spiketrain during spikedetection.
* Add `spike_amplitude_to_background_noise` statistics.
* New protocol for `Data` module prot

Minor

- bug: zero spikerate
- docs: update on SNR tools
- test: unittests on SNR features
- test: unittests on BSA coding module
- test: unittests on arduino module
- test: unittests on StimJim module
- test: unittests on geometry protocol
- test: unittests on OE TTL event readout
- test: more unittests on butter-bandpass module
- git-action: use python-action cache for poetry
- git-action: remove windows test with cache

Dependencies

- deprecated: removed h5py_cache
- pyseries -> pyserial dependency

**Full Changelog**: https://github.com/GazzolaLab/MiV-OS/compare/v0.2.2...v0.2.3

What's Changed

* Import binary raw file by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/116
* Include reverse capability for stimjim
* Documentation Update

Bug Fix

* Binned Spiketrain algorithm now includes counting
* Fix bug in synchronizing timestamps for TTL event recording
* Update dependencies and fix related issues

**Full Changelog**: https://github.com/GazzolaLab/MiV-OS/compare/v0.2.1...v0.2.2

What's Changed

* Test Cases + Bug fix binned_spiketrain by Gauravu2 in https://github.com/GazzolaLab/MiV-OS/pull/93
* Shift documentation theme to PyData by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/94
* Initial implementation of MiV HDF5-based data format by iraikov in https://github.com/GazzolaLab/MiV-OS/pull/90
* TTL event readout from OpenEphys dataset by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/99
* Add core datatypes: SpikeTrain by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/102
* Setup dependabot by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/103
* Documentation theme updated to `pydata-theme`

New Contributors

* iraikov made their first contribution in https://github.com/GazzolaLab/MiV-OS/pull/90
* dependabot made their first contribution in https://github.com/GazzolaLab/MiV-OS/pull/107

Dependency Version Upgrade

* build(deps-dev): bump flake8 from 4.0.1 to 5.0.4 by dependabot in https://github.com/GazzolaLab/MiV-OS/pull/107
* build(deps): bump codecov/codecov-action from 2 to 3 by dependabot in https://github.com/GazzolaLab/MiV-OS/pull/105
* build(deps): bump actions/setup-python from 2.2.2 to 4.2.0 by dependabot in https://github.com/GazzolaLab/MiV-OS/pull/104
* build(deps-dev): bump pylint from 2.14.5 to 2.15.0 by dependabot in https://github.com/GazzolaLab/MiV-OS/pull/111

**Full Changelog**: https://github.com/GazzolaLab/MiV-OS/compare/v0.2.0...v0.2.1

[Milestone](https://github.com/GazzolaLab/MiV-OS/issues/30)

What's Changed

* Connectivity visualization by Gauravu2 in https://github.com/GazzolaLab/MiV-OS/pull/82
* Audio encoding (Lyon's Ear Model + BSA) by skim0119 in https://github.com/GazzolaLab/MiV-OS/pull/91
* Update Tests

**Full Changelog**: https://github.com/GazzolaLab/MiV-OS/compare/v0.1.2...v0.2.0