Monviso

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- Add "monviso analysis" tool
- Move standard monviso worklof to "monviso isoform"
- Update Docs
- Add mmCIF support
- Fix some bugs on hmmer path, and when mutation number > sequence length

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- Fix: Correct residue number at chain breaks (for more cases)

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- Fix: Removing sorting of models in Modeller script
makes the software compatible with the Modeller's
version in conda

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- Added Containerfile for Docker
- Fix: Removal of maximum 10 models reported

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- Fix: The model now is assigned to chain A
- Fix: Correct residue number at chain breaks
- Fix: Alignment, scoring, and filtering is repeated as long as
the list of templates keeps changing
- Fix: If mutation can be mapped on sequence, but it is not
covered by templates, it gets reported in the report.md file