Indexed GNPS library for flash reverse cosine search (ALL_GNPS_NO_PROPOGATED.msp, downloaded on July 17, 2024).
In **gnps.zip**:
- gnps.pkl: indexed GNPS library with peak intensities square rooted
- gnps_k10.pkl: indexed GNPS library with peak intensities scaled and square rooted
In **gnps_minmz100.zip** (for MS imaging data):
- gnps_minmz100.pkl: indexed GNPS library with peak intensities square rooted, mz values < 100 are removed
- gnps_minmz100_k10.pkl: indexed GNPS library with peak intensities scaled and square rooted, mz values < 100 are removed
Library indexing parameters were used as follows.
gnps.pkl (mz_tol=0.05, peak_scale_k=None, peak_intensity_power=0.5, min_indexed_mz=0)
gnps_k10.pkl (mz_tol=0.05, peak_scale_k=10, peak_intensity_power=0.5, min_indexed_mz=0)
gnps_minmz100.pkl (mz_tol=0.05, peak_scale_k=None, peak_intensity_power=0.5, min_indexed_mz=100)
gnps_minmz100_k10.pkl (mz_tol=0.05, peak_scale_k=10, peak_intensity_power=0.5, min_indexed_mz=100)