Multiscale-spatial-image

Latest version: v2.0.2

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2.0.2

What's Changed
* update readme example to new xarray by melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/102
* Add operations to multiscale spatial image by melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/103


**Full Changelog**: https://github.com/spatial-image/multiscale-spatial-image/compare/v2.0.1...v2.0.2

2.0.1

What's Changed
* drop python.3.13 by melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/98
* BUG: download test data from GitHub Releases by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/99
* BUG: Remove Python 3.8 conditions in test.yml by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/96
* Add decorator for skipping nodes without dimension by melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/101
This allows for applying functions over all datasets in the `MultiscaleSpatialImage` `DataTree` that contain dimensions. See the README for an example.


**Full Changelog**: https://github.com/spatial-image/multiscale-spatial-image/compare/v2.0.0...v2.0.1

2.0.0

What's Changed
* adjust to xarray datatree by melonora in https://github.com/spatial-image/multiscale-spatial-image/pull/94

The library `datatree` has been archived. `Xarray` now includes `DataTree` directly. Some changes to the datamodel have been made. In short dimensions and indexes in child nodes should exactly align with those in their parents. However, for `MultiscaleSpatialImage` this does not seem to be the case as the root node does not contain dimensions while the child nodes do. According to [migration guide](https://github.com/pydata/xarray/blob/main/DATATREE_MIGRATION_GUIDE.md) the dimensions and indexes of sibling nodes do not have to align.

On top of these changes the `DataTree` has certain methods removed. The behaviour of these methods can be replicated (in particular when adjusting dimensions or reindexing) by writing a decorator that takes a `xr.Dataset` and skips over the nodes that contain `dims` of length `0`. One can then apply `map_over_datasets`. For documentation, see [here](https://docs.xarray.dev/en/latest/generated/[xarray.DataTree.map_over_datasets](https://docs.xarray.dev/en/latest/generated/xarray.DataTree.map_over_datasets.html).html).

New Contributors
* melonora made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/94

**Full Changelog**: https://github.com/spatial-image/multiscale-spatial-image/compare/v1.0.1...v2.0.0

1.0.1

What's Changed
* BUG: Add zarr to package dependencies by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/86
* pixi conf by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/87
* ENH: Add Python 3.12 to CI testing by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/83
* ENH: Add macOS ARM support in CI by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/84
* pixi notebooks by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/88
* BUG: Pass mode to to_zarr superclass method by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/69
* pyimagej bump by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/89
* pre commit by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/90
* BUG: Use mode='w' fro pyimagej notebook by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/91


**Full Changelog**: https://github.com/spatial-image/multiscale-spatial-image/compare/v1.0.0...v1.0.1

1.0.0

What's Changed
* BUG: Remove IPFS daemon from CI setup by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/82
* datatree accessor to multiscale spatial image by giovp in https://github.com/spatial-image/multiscale-spatial-image/pull/81


**Full Changelog**: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.11.2...v1.0.0

0.11.2

What's Changed
* DOC: Specify to_zarr store type by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/68
* BUG: Bump itk version dep for 5.3.0 by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/72
* ENH: Update CI to include testing for Python 3.11 by thewtex in https://github.com/spatial-image/multiscale-spatial-image/pull/75
* list downsampling methods in docstring of `to_multiscale` by giovp in https://github.com/spatial-image/multiscale-spatial-image/pull/74
* raise error for invalid scale factors by giovp in https://github.com/spatial-image/multiscale-spatial-image/pull/73

New Contributors
* giovp made their first contribution in https://github.com/spatial-image/multiscale-spatial-image/pull/74

**Full Changelog**: https://github.com/spatial-image/multiscale-spatial-image/compare/v0.11.1...v0.11.2

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