Napari-clusters-plotter

Latest version: v0.7.3

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0.7.3

What's Changed
* Make cluster image uint32 by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/259
* Remove features that contain inf by zoccoler in https://github.com/BiAPoL/napari-clusters-plotter/pull/264


**Full Changelog**: https://github.com/BiAPoL/napari-clusters-plotter/compare/0.7.2...0.7.3

0.7.2

What's Changed
* Fix reset zoom by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/254


**Full Changelog**: https://github.com/BiAPoL/napari-clusters-plotter/compare/0.7.1...0.7.2

0.7.1

Bugfix:
* Incompatibility with pytorch on conda-forge/Windows (248 )

0.7.0

New features
* Use 2D Histogram for visualization by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/196
* Colormap pulldown for 2D histogram by marabuuu in https://github.com/BiAPoL/napari-clusters-plotter/pull/239
* Implement Histogram1D if the same measurement is selected for both axes by lazigu and zoccoler in https://github.com/BiAPoL/napari-clusters-plotter/pull/237
* Change highlights in timelapse data plotting to brighter colors instead of white by Cryaaa in https://github.com/BiAPoL/napari-clusters-plotter/pull/244

What else has changed
* Allow flexible cluster ids by zoccoler in https://github.com/BiAPoL/napari-clusters-plotter/pull/205
* Pin numpy version due to incompatibility with numba by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/219
* Update tests workflow file (disable tests on windows, update versions, use codecov token) by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/231
* Fix small bugs in the plotter widget 2 by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/227
* Fixes link of the tests badge by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/233
* Don't reset zoom on redraw by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/214
* Add more tests by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/230
* Update documentation by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/234
* Add min distance for UMAP parameter by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/235
* Add optional custom name field for dimensionality reduction by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/236
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/BiAPoL/napari-clusters-plotter/pull/238
* Implement lowercase interpretation of keys by Cryaaa in https://github.com/BiAPoL/napari-clusters-plotter/pull/243
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/BiAPoL/napari-clusters-plotter/pull/240
* make layout slimmer by haesleinhuepf in https://github.com/BiAPoL/napari-clusters-plotter/pull/245
* Expose frame_changed method by zoccoler in https://github.com/BiAPoL/napari-clusters-plotter/pull/221

New Contributors
* marabuuu made their first contribution in https://github.com/BiAPoL/napari-clusters-plotter/pull/239

**Full Changelog**: https://github.com/BiAPoL/napari-clusters-plotter/compare/0.6.2...0.7.0

0.6.2

Most important changes

Now the labels do not need to be sequential for the visualization to be correct. Thanks to haesleinhuepf!
Two new dimensionality reduction algorithms (Isomap and MDS).

What's Changed
* Fill measurement lists when initializing dock widgets by haesleinhuepf in https://github.com/BiAPoL/napari-clusters-plotter/pull/179
* increase spot alpha by haesleinhuepf in https://github.com/BiAPoL/napari-clusters-plotter/pull/183
* Add more docstrings by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/184
* Make widgets available via public API by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/185
* Add dimensionality reduction algorithms (Isomap and MDS from scikit-learn) by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/187
* Add a check whether given axes names exist when plotting from notebook by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/188
* Set unselected datapoints as background/noise by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/193
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/BiAPoL/napari-clusters-plotter/pull/201
* add force redraw option by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/199
* Support non sequential label images and unsorted measurements by haesleinhuepf in https://github.com/BiAPoL/napari-clusters-plotter/pull/197
* Use unique elements of cluster IDs to create colormap by thorstenwagner in https://github.com/BiAPoL/napari-clusters-plotter/pull/203
* Update codecov.yml by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/208
* Update requirements.txt by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/210
* Fix axes labels not displayed bug by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/194

New Contributors
* thorstenwagner made their first contribution in https://github.com/BiAPoL/napari-clusters-plotter/pull/193

**Full Changelog**: https://github.com/BiAPoL/napari-clusters-plotter/compare/0.6.1...0.6.2

0.6.1

Bugfixes
* UMAP crashing jupyter notebook kernel is fixed by disabling multithreading for this algorithm
* Fixed a bugfix (keyerror) related to the newest Matplotlib version

What's Changed
* Update installation instructions in the readme by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/162
* Disable one test that passes locally but timeout error on github by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/166
* Update menu locations in docs by haesleinhuepf in https://github.com/BiAPoL/napari-clusters-plotter/pull/165
* Create codecov.yml by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/173
* Disable multithreading for UMAP by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/170
* Disable buttons when computation is running by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/171
* Remove pinned version of joblib by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/174
* UMAP/t-SNE dimensions by lazigu in https://github.com/BiAPoL/napari-clusters-plotter/pull/172


**Full Changelog**: https://github.com/BiAPoL/napari-clusters-plotter/compare/0.6.0...0.6.1

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