Napari-lattice

Latest version: v0.2.7

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0.2.7

Fixed bug when reading PSFs: https://forum.image.sc/t/llszwidget-error-in-napari-lattice/79823

0.2.6

**MAJOR UPDATES:**

* BUG FIX: Orthogonal interpolation is enabled by default. Thanks to haesleinhuepf for helping implement this in pyclesperanto-prototype https://github.com/clEsperanto/pyclesperanto_prototype/issues/196. Thanks to dpshepherd for his help as well. This will get rid of edge artefacts with highly anisotropic data.
* Changed GUI so GPU option and deskew angle are now within the Initialize button Dialog Box.
* Can now choose GPU option when Initializing napari plugin
* DrLachie added support for running napari-lattice from the HPC, and fixed bugs in the batch processing section
* Updated notebooks

Tests:
* Fixed Github workflows so it should work with QT tests
* Added more tests for deskewing, cropping and testing batch processing using napari-lattice

** _References for orthogonal interpolation:_**
* [Sapoznik et al., 2020](https://elifesciences.org/articles/57681)
* [qi2lab-OPM](https://github.com/QI2lab/OPM)

0.2.5

* DrLachie fixed a bug with workflows when using napari_lattice in the terminal
* Added dependabot so it keeps dependencies up to date in github actions

0.2.4

- Fixed bugs with reading channels and time ranges
- Added support for using config files when running from terminal https://github.com/BioimageAnalysisCoreWEHI/napari_lattice/issues/12
- Added functionality to process single ImageJ roi files (.roi) files in addition to ImageJ roi zip files.

Minor:
- Logging instead of print statements

Had to update release from 0.2.2a to 0.2.4 as we wanted 0.2.4 to be the default install

Contributors: pr4deepr and DrLachie

0.2.1alpha

- Fixed edge artefacts when performing deconvolution using `pycudadecon` https://github.com/BioimageAnalysisCoreWEHI/napari_lattice/commit/e87095dd661aa4879951eb048964dea4f4a5a8cd
- Fixed h5 saving so any channel range and time range can be saved https://github.com/BioimageAnalysisCoreWEHI/napari_lattice/commit/744e1b64841c03ebc6fab219a588d9ab32bc00fb
- Added example notebooks for deconvolution https://github.com/BioimageAnalysisCoreWEHI/napari_lattice/commit/eff3901b669e7468a7cf80d9de0be7826cec3a9e
- Cropping is no agnostic to skew direction. Should work on skew direction of X or Y.
- Fixed `Not a tiff file` error when reading psfs for czi https://github.com/BioimageAnalysisCoreWEHI/napari_lattice/commit/6d54ef7e68b0fe7a31073b4f23c563fb4e80b5a4
- Widget for `Preview Deskew` is now collapsible
- Only the main Cropping Widget is scrollable.

0.2.0

- Added napari spreadsheets as dependency to enable easy preview of tables when using "Preview Workflows" on workflows that return tables.
- Added wiki and examples for generating workflows using napari-assistant
- Added wiki and examples for using CellPose for segmenting lattice lightsheet data

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