Napari-spatialdata

Fixed

- Saving shapes and points with `Shift + E` now saves 2D data (a z dim was wrongly added)

Added

- Multi table support 199 melonora
- Color shapes and points by values in dataframe in addition to tables 216

Fixed

- Avoid exception when registering shortcuts 201 aeisenbarth
- Fix wrong point size when affine specified 193
- Wrong element visiblity when changing coordinate system 207
- Cleaned up data model 180
- Fixes correct matching of geometies and annoations via join 208
- Better docstrings 219

fixed

- removed npe (napari plugin engine) dependency

Added

- New APIs for changing coordinate systems 169
- New APIs for adding single elements 170
- Improved code to link new layers to layers with a `SpatialData` object 173

Fixed

- Enabled saving annotations 168
- Added safeguard when table is None 177 aeisenbarth
- Fix plotting annotations when changing element 175
- Fixed installation requirements 185 goanpeca

Added

- Global parameters POINT_THRESHOLD and POLYGON_THRESHOLD added to allow users to adjust these parameters.

Fixed

- Updated dependencies
- Updated installation instructions since napari conda-forge no longer installs Qt backend. psobolewskiPhD
- Allow for viewing SpatialData object with no annotations. aeisenbarth

Added

- Multiple SpatialData objects support (ported from the "spatialdata" branch)
- Interactive is more ergonomic, has a headless parameter, can be used to display pre-configured elements
- Remembering user layer visibility settings when changing coordinate system

Fixed

- Fixes in CLI
- Several internal bugfixes and code refactorings
- Fixes in updating affine transformation when changing coordinate system