- **New Feature**:
1. Added two new buttons to streamline batch processing workflows:
Current Stack Batch Processing:
Processes the currently loaded stack immediately without requiring the user to press additional buttons.
Multi Stack Batch Processing:
Enables processing of multiple stacks with no user interaction during the operation. Intermediate results are saved and made available after processing is complete.
This feature uses the SORT tracking algorithm to reconstruct 3D segmentation masks.
To use this feature, create a CSV file named file_names_for_batch_processing.csv, listing the paths to all stacks. Place this CSV file in the same directory as the raw stacks.
2. Fluorescence Intensity Calculation:
The Compute Fluorescence Intensity feature now calculates channel intensity based on the signal_intensity_channel parameter in the configuration file.
"signal_intensity_channel": 0
3. Support for a Third Channel:
Added the ability to process a third channel by specifying its index in the configuration file. The following parameters control this feature:
"green_channel": 0,
"red_channel": 1,
"blue_channel": -1
-1 indicates no third channel.
To process an additional channel, specify its index:
For a third channel, set "blue_channel": 2.
For a fourth channel, set "blue_channel": 3.