Ndexstringloader

Latest version: v1.0.3

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1.0.3

-------------------

* Updated URL paths to data files because they moved on STRING server

* Set default STRING version to ``12.0``

* Version of STRING data used is now appended to the network name.

* Updated default network description and default style template file

1.0.2

-------------------

* Fixed bug where ``--stringversion`` was being ignored when
downloading data files

* Set default version to ``11.5``

* Fixed bug where ``version`` network attribute was not being updated
with value of ``--stringversion``

* Changed URL to `human.entrez_2_string.2018.tsv.gz` cause it
moved on STRING server

* ``--cutoffscore`` parameter can now take multiple values and a network
for each value will be generated and uploaded to NDEx. The default
is set to generate a network with all edges (0.0 --cutoffscore) and a
network with edges 0.7 and above

1.0.0

------------------

* New default behavior: **force-directed-cl** layout is now applied on
networks via py4cytoscape library and a running instance of Cytoscape.
Alternate Cytoscape layouts and the networkx "spring" layout can be
run by setting appropriate value via the new **--layout** flag

0.3.0

------------------

* Added ``--skipupload`` that lets caller skip upload of network to NDEx

* Spring layout applied by default for all networks that have less then 2,000,000
edges. This can be overridden with new flag ``--layoutedgecutoff``

0.2.4

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* Fixed defect UD-462 Verify new network attributes are correctly set in ndexstringloader (https://ndexbio.atlassian.net/browse/UD-462).

0.2.3

------------------
* If user loads the entire STRING network (i.e., runs the script with --cutoffscore 0), the name of the resulting netwpork should be "STRING - Human Protein Links", not "STRING - Human Protein Links - High Confidence".

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