Main Package Features
- One-click pipeline for structural connectome estimation from DWI and T1w images
- Leverages Dipy, Plotly, Nilearn, FSL, Networkx, and others
- Supports several command-line APIs, including the BIDS app specification
- Has session- and group-level analysis, performing connectome estimation and summary statistic computation, respectively
- Session-level analysis generates 1mm resolution connectomes across 25 parcellations ranging in size from 48 to 72,000 nodes, all in MNI152 standard space.
- Direct interfaces with Amazon Web Services for batch processing of data stored in the cloud.
- Public repository of connectomes available at [http://m2g.io](http://m2g.io)
For more information, please see the README of this repository.
Install Instructions
`pip install ndmg`\*
\* once FSL is installed
***OR***
Available through Docker, with: `docker pull bids/ndmg:v0.1.0`. Container is compatible with Singularity 2.4.1, though pulling from Singularity Hub is not currently available for this pipeline.
Usage Instructions
Through the BIDS app interface, `ndmg` can be used as follows:
ndmg_bids bids_directory output_directory {session, group} [--participant_level []] [--session_level []]