Netcoloc

Latest version: v0.1.7

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0.1.7

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* Removed unused `network_localization.py` module

0.1.6

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* `ipycytoscape <https://ipycytoscape.readthedocs.io/en/latest>`__ added as a dependency

* `ipywidgets <https://ipywidgets.readthedocs.io/en/latest>`__ added as a dependency

* Added `network_colocalization.sweep_input_pvals()` to sweep p-values and scores

* Added `network_colocalization.calculate_network_enrichment()` to sweep over z-score thresholds

* `netprop.get_individual_heats_matrix()` can take a networkx `Graph` object and internally call
`netprop.get_normalized_adjancency_matrix()`. Documentation updated in both methods to note
that the resulting matrices can be saved via `numpy.save()` and retrieved via `numpy.load()`

* `example_notebooks/ASD_CHD_NetColoc_analysis.ipynb` now visualizes hierarchy using
`ipycytoscape <https://ipycytoscape.readthedocs.io/en/latest>`__

* `example_notebooks/ASD_CHD_NetColoc_analysis.ipynb` updated with a note about using `numpy.save()`
and `numpy.load()` to save and retrieve result from `netprop.get_individual_heats_matrix()`

0.1.5

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* Fixed divide by zero error seen when calculating cosine distance by updating `netprop.get_normalized_adjancency_matrix()`
to properly normalize an adjacency matrix that is asymetric (UD-1863)

0.1.4

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* If import of DDOT package fails, only a warning message will be
displayed unless user invokes ``netcoloc.validation.load_MPO()``
in which case an ``ImportError`` is raised

* Fixed bug where ``z1_threshold`` parameter was being passed to ``z2_threshold`` parameter in
``netcoloc.network_cololcalization.calcualte_network_overlap`` method called by ``netcoloc.network_colocalization.calculate_network_overlap_subgraph`` method

0.1.3

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* Added dependency `gprofiler-official <https://pypi.org/project/gprofiler-official>`__
to ``setup.py`` and ``requirements.txt`` because this is used by
``network_colocalization.py``

0.1.2

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* Added new `validation.py` module containing mouse knockout database
functionality

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