Neurom

Latest version: v3.2.10

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3.2.3

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- Fix neurom.app.morph_stats.extract_dataframe for Population objects with several workers (1080)
- Update readthedocs config (1077)
- Can pass List[Population] args to neurom.app.morph_stats.extract_dataframe (1076)
- Fix compatibility with MorphIO>=3.3.6 (1075)
- Check that soma is not empty when features need it (1073)

3.2.2

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- Fix QhullError warning (1063)

3.2.1

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- Fix: extract_stats could not work on single neurite (1060)
- Fix view cli to use 'equal' axis when available (1051)
- Remove single point contour somas in h5 and asc tests (1045)
- Remove duplicated deps jinja, sphinx (1043)

3.2.0

-------------

- Add ``neurom.features.morphology.length_fraction_above_soma`` feature.
- List of multiple kwargs configurations are now allowed in``neurom.apps.morph_stats``.
- ``neurom.features.neurite.principal_direction_extents`` directions correspond to extents
ordered in a descending order.
- Add features ``neurom.features.morphology.(aspect_ration, circularity, shape_factor)
- Fix ``neurom.morphmath.principal_direction_extent`` to calculate correctly the pca extent.
- Fix ``neurom.features.neurite.segment_taper_rates`` to return signed taper rates.
- Fix warning system so that it doesn't change the pre-existing warnings configuration
- Fix ``neurom.features.bifurcation.partition_asymmetry`` Uylings variant to not throw
for bifurcations with leaves.
- Fix ``neurom.features.neurite.principal_direction_extents`` to remove duplicate points
when calculated.
- Add ``neurom.features.morphology.volume_density`` feature so that it is calculated
correctly when the entire morphology is taken into account instead of summing the per
neurite volume densities.
- Add support for py39 and py310 testing.
- Fix ``neurom.features.morphology.sholl_frequency`` to return an empty list when a
neurite_type that is not present in the morphology is specified.
- Fix ``neurom.features.morphology.trunk_origin_radii`` to warn and use only the root
section for the calculation of the path distances. Edge cases from the combination
of ``min_length_filter`` and ``max_length_filter`` are addressed.
- Fix ``neurom.features.morphology.sholl_frequency`` to use soma center in distance
calculation, instead of using the origin.
- Add ``neurom.features.morphology.trunk_angles_inter_types`` and
``neurom.features.morphology.trunk_angles_from_vector`` features, make
``neurom.features.morphology.trunk_angles`` more generic and add length filter to
``neurom.features.morphology.trunk_origin_radii``.
- Deprecate python3.6
- Add doc on spherical coordinates.

3.1.0

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- Add morphology features total_width, total_height and total_depth

3.0.2

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- Fix 'raw' mode in ``neurom stats``.
- Add example astrocyte analysis notebook.
- Fix readthedocs documentation build.
- Delete all requirements txt files and update documentation accordingly.
- Adding back unifurcation check

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