Nichart-dlmuse

What's Changed
* Extracting individual ROI masks by georgeaidinis in https://github.com/CBICA/NiChart_DLMUSE/pull/18
* Renamed niCHARTPipelines -> **NiChart_DLMUSE**

Changelog (overview):

- Switched from pytorch_v1 to pytorch-2.0.1
- Added a CLI argument for extracting all ROI masks (for the 145 individual MUSE masks)
- Removed duplicate code, moved util functions
- Updated documentation

**Full Changelog**: https://github.com/CBICA/NiChart_DLMUSE/compare/0.1.5...0.1.7

What's Changed
* Integrate nnUNet with ability to run multiple cases in a folder by ashishsingh18 in https://github.com/CBICA/niCHARTPipelines/pull/7
* Updated the CLI to accept parameters for the nnUNet models. Additional stuff for packaging etc. by georgeaidinis in https://github.com/CBICA/niCHARTPipelines/pull/8
* Reorientation scripts, transposed output .csv, updated dockerfile & speed improvements with torch by georgeaidinis in https://github.com/CBICA/niCHARTPipelines/pull/12
* Add github stat collection persistence by AlexanderGetka-cbica in https://github.com/CBICA/niCHARTPipelines/pull/14
* Solution to weird artifacts created by DLICV by georgeaidinis in https://github.com/CBICA/niCHARTPipelines/pull/16

New Contributors
* georgeaidinis made their first contribution in https://github.com/CBICA/niCHARTPipelines/pull/8

**Full Changelog**: https://github.com/CBICA/niCHARTPipelines/compare/0.1.0...0.1.5

This is the DeepMRSeg version of the structural pipeline.

What's Changed
* Pass params to pipeline by ashishsingh18 in https://github.com/CBICA/niCHARTPipelines/pull/1
* Update readme and add requirements.txt by ashishsingh18 in https://github.com/CBICA/niCHARTPipelines/pull/2
* Fix bug in Structural.py by gurayerus in https://github.com/CBICA/niCHARTPipelines/pull/3
* Add singularity recipe by AlexanderGetka-cbica in https://github.com/CBICA/niCHARTPipelines/pull/4
* Packaging by ashishsingh18 in https://github.com/CBICA/niCHARTPipelines/pull/5
* Add dockerfile and update readme by ashishsingh18 in https://github.com/CBICA/niCHARTPipelines/pull/6

New Contributors
* ashishsingh18 made their first contribution in https://github.com/CBICA/niCHARTPipelines/pull/1
* gurayerus made their first contribution in https://github.com/CBICA/niCHARTPipelines/pull/3
* AlexanderGetka-cbica made their first contribution in https://github.com/CBICA/niCHARTPipelines/pull/4

**Full Changelog**: https://github.com/CBICA/niCHARTPipelines/commits/0.1.0