Nirodents

=========================

* MAINT: Rotate CircleCI secrets and setup up org-level context by oesteban in `58 <https://github.com/nipreps/nirodents/pull/58>`__
* MAINT: Replace versioneer with setuptools-scm & adapt packaging to PEP517 by oesteban in `60 <https://github.com/nipreps/nirodents/pull/60>`__
* MAINT: Flexibilize dependency pinnings by oesteban in `59 <https://github.com/nipreps/nirodents/pull/59>`__

**Full Changelog**: https://github.com/nipreps/nirodents/compare/0.2.7...0.2.8

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* MAINT: update docker (57)

======================

* MAINT: docker deployment (56)
* MAINT: bump niworkflows to 1.5.x (55)

======================

* FIX: N4 updates (54)
* FIX: input image absolute path (53)
* FIX: update brain extraction notebook (51)
* FIX: reorder pre-brain extraction massaging
* PIN: pandas and scipy versions in docker file (49)
* PIN: niworkflows 1.4.x (48)
* DOC: update changes.rst (47)

==========================

* ENH: improved clip function (45)
* ENH: improved brain extraction parameters (44)
* FIX: cli updated so antsai no longer default (42)
* ENH: improve aniso bspline (41)
* ENH: scale Laplacian smoothing with voxel size (40)
* ENH: Continue refactoring the workflow (38)
* REL: Preparing a 1.0 release (37)
* ENH: adapt antsai paramaters from cli (36)
* ENH: Deep revision of the workflow (35)
* ENH: Add RATS (commented out) and PCNN to dockerfile (34)
* ENH: Second refactor of workflow - make ``antsAI`` optional (33)
* ENH: Add an entrypoint in container images (32)
* ENH: Several improvements over the overhaul (31)
* ENH: Workflow overhaul (30)
* MAINT: Run black on the full repo, address pep8 errors (27)
* MAINT: tidy workflow (23)
* ENH: Setup a smoke test on CircleCI + minor improvements to CLI (26)
* FIX: Correctly pin niworkflows branch and use new interface (25)
* FIX: resampling bug (22)
* MAINT: Update version pinning of nipype and niworkflows to dev versions (20)
* ENH: Add AFNI to docker image (19)
* FIX: Data init file (18)
* FIX: Set correct binary path for ANTS (17)
* ENH: add mosaic plots and wrapper (16)

========================
First usable release, still in alpha status.

* FIX: Correctly pin niworkflows branch and use new interface (25)
* FIX: Bug in resampling interface (22)
* FIX: Data init file (18)
* FIX: Set correct binary path for ANTS (17)
* ENH: Improve anisotropic B-Splines for INU correction (41)
* ENH: Scale Laplacian smoothing with voxel size (40)
* ENH: Continue refactoring the workflow (38)
* ENH: Adapt ``antsAI`` paramaters from CLI (36)
* ENH: Deep revision of the workflow (35)
* ENH: Add RATS (commented out) and PCNN to ``Dockerfile`` (34)
* ENH: Second refactor of workflow - make ``antsAI`` optional (33)
* ENH: Add an entrypoint in container images (32)
* ENH: Several improvements over the overhaul (31)
* ENH: Workflow overhaul (30)
* ENH: Setup a smoke test on CircleCI + minor improvements to CLI (26)
* ENH: Add AFNI to docker image (19)
* ENH: add mosaic plots and wrapper (16)
* MAINT: Run black on the full repo, address pep8 errors (27)
* MAINT: Tidy-up workflow (23)
* MAINT: Update version pinning of nipype and niworkflows to dev versions (20)