Niworkflows

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New feature release in the 1.13.x series.

This release restructures the ANTs brain extraction workflow.
This should be a backwards compatible change, but a minor release is used out of caution.

* FIX: Remove duplicated code, problematic deviation from antsBrainExtraction (931)
* FIX: Listify numbers (925)
* ENH: Allow + symbol in label entities (926, 927)
* STY: Apply various ruff checks (913, 915, 917, 918, 919, 930)

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Patch release that includes a new keyword argument to `BIDSDataGrabber` to bypass requiring a T1w image.

* ENH: Parse kwargs to allow no T1w (922)
* MNT: Bump astral-sh/setup-uv from 4 to 5 (920)
* STY: Format + add git blame ignore file (923)
* STY: Apply ruff/Pylint rule PLR0402 (916)
* STY: Apply ruff/flake8-pie rules (PIE) (914)
* STY: Apply ruff/flake8-comprehensions preview rule C409 (912)
* STY: Use f-strings where possible (836)

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Patch release that adds a new input to `SpatialNormalization`, but remains backwards compatible.

* ENH: Allow adjusting histogram matching of configuration files (911)

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New minor release in the 1.12.x series.

This release includes support for Python 3.13, Numpy 2.0 and Nipype 1.9.

Note that using Python 3.13 requires building traits from the development branch.

* FIX: Pandas deprecations (906)
* FIX: Numpy 2 compatibility (905)
* FIX: Check 2D spaces against list from templateflow (888)
* ENH: Add boldmap suffix to filename patterns. (899)
* ENH: Add dir entity to T2starmap pattern. (898)
* TEST: CIFTI2 expected checksum has changed (895)
* STY: Replace black+flake8 with ruff, add pre-commit (904)
* STY: use f-string within normalization interface (892)
MNT: Enable 3.13 tests (909)
* MNT: Switch to tox for testing and CI (900)
* MNT: Drop Python 3.8, update dependencies (896)
* CI: Fix get_data job on CircleCI (897)

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New minor release to start the 1.11.x series.

The major changes include:
- a deprecation to T1w-only based template processing
- addition of a new dependency ``acres`` for accessing package data

However, this is still backwards compatible with the 1.10.x series.

* MAINT: Depend on acres for data access
* ENH: Add PrepareDerivative/SaveDerivative interfaces (885)
* ENH: Make template dimensions support T2w as well (879)
* ENH: Modify FSSource to output T2 (868)
* FIX: Set cal_max in the NIfTI header for visualization after ``IntensityClip`` (878)
* FIX: Remove accidental MRIQC dependency, allow app config to be passed to workflow plugin (876)
* TEST: Fix plugin invocation, use an initializer that can be verified (880)

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Bug-fix release in the 1.10.x series

* ENH: Modify FSSource to output T2 (868)
* STY: Apply ruff/flake8-implicit-str-concat rule ISC001 (870)
* STY: Remove extraneous quotes (859)
* STY: Apply assorted ruff/refurb rules (867)
* MNT: update vendored docs files (834)
* MNT: Fix deprecation error in CI (866)