Niworkflows

==========================
New feature release in the 1.10.x series.

This release has several improvements targeting ASLPrep and MRIQC, particularly
around BIDS tooling and workflow plugins.
We also drop our use of Convert3D in favor of nitransforms, allowing downstream
projects to remove this non-Python dependency as needed.

Some fixes change workflow structure, so please test before upgrading.

* FIX: Copy header to ensure mask is really aligned (844)
* FIX: Correctly use ``ignore_initial_volumes`` in ``ConfoundsCorrelationPlot`` (846)
* FIX: Add DWI to the default queries of BIDS querying (833)
* ENH: Add ``ignore_initial_volumes`` param to ``ConfoundsCorrelationPlot`` (843)
* ENH: Add MRIQC's custom multiproc runner that allows passing the pool (841)
* ENH: Upstream debugging hook from MRIQC (842)
* ENH: Add ASL support in BIDS utilities (839)
* ENH: Add hemi entity to transform path patterns (832)
* RF: Replace Convert3d with nitransforms in MCFLIRT2ITK (835)
* DOC: fix typo in refmap.py (837)
* STY: Assorted refurb suggestions (831)
* MNT: http:// → https:// (#828)
* CI: Bump actions/setup-python from 4 to 5 (845)
* CI: Bump conda-incubator/setup-miniconda from 2 to 3 (840)

========================
New feature release in the 1.9.x series.

This release should be mostly compatible with 1.8.x.
The most significant addition is the :class:`niworkflows.data.Loader`,
which provides some wrapping around :mod:`importlib.resources` to make
accessing resources more convenient.

* FIX: Build config and CI (826)
* FIX: Compatibility with matplotlib 3.8.0 (825)
* FIX: Save boldrefs as float32 (821)
* FIX: Replace deprecated Matplotlib functionality (820)
* FIX: Test names of paths when calling path.iterdir() (818)
* ENH: Add PET support to niworkflows (823)
* ENH: Add data loader class, install at root and data modules (816)
* MNT: Pyupgrade suggestions (817)
* MNT: update vendored docs files (813)
* CI: Bump actions/checkout from 3 to 4 (824)

=====================
Patch release in the 1.8.x series.

This release includes a fix to CIFTI volume structure indices, and adds additional Workbench interfaces.

* ENH: Port GIFTI/CIFTI interfaces from fMRIPrep (811)
* FIX: Generate CIFTI volume structure indices in column-major order (815)

=====================
New feature release in the 1.8.x series.

This includes only bug-fixes, however the reselection of "white" surfaces
as the default gray/white boundary instead of "smoothwm" justifies a minor
release.

* FIX: Add desc entity to all path patterns (808)
* FIX: Inspect if template has resolution instead of assuming (803)
* FIX: Add missing ``dir-{direction}`` pattern for data sinking DWI reportlets (807)
* FIX: Move from smoothwm to white (806)
* FIX: Add option to bypass twopass in AFNI RobustAverage (801)
* FIX: Use len(segments) to avoid nsegments becoming wrong (795)
* MNT: Add PendingDeprecationWarning to nireports modules (810)
* MNT: Configure dependabot to upgrade actions (796)
* MNT: Drop Python 3.7 support, test 3.11 (793)
* MNT: Update build system and CI invocations (792)
* CI: Do not run scheduled builds on forks (800)
* CI: Bump codespell-project/actions-codespell from 1 to 2 (805)
* CI: Bump actions/checkout from 2 to 3 (797)
* CI: Build and upload wheels (791)

======================
Patch release in the 1.7.x series.

This release contains a minor fix for degenerate cases that arise on very
low resolution datasets, such as used for CI testing.

* FIX: Use len(segments) to avoid nsegments becoming wrong (795)

======================
Patch release in the 1.7.x series.

This release combines the fixes in 1.7.6 and 1.7.7, which were accidentally separately
branched from 1.7.5.