Omamer

Latest version: v2.1.0

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2.1.0

What's Changed

This release contains various performance improvements for classification with the focus on single-thread speed and parallel scaling.

2.0.5

**Full Changelog**: https://github.com/DessimozLab/omamer/compare/v2.0.4...v2.0.5

2.0.4

What's Changed
* [FIX] freeze numpy dependency to <2 (issue 34)
* [ADD] experimental support to build omamer databases from orthoxml/fasta files
* Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.9.0 by dependabot in https://github.com/DessimozLab/omamer/pull/33

**Full Changelog**: https://github.com/DessimozLab/omamer/compare/v2.0.3...v2.0.4

2.0.3

2.0.2

- changed method for hiding taxa in build process. Now takes a file containing taxa to hide on separate lines.
- checks and improved feedback for root taxon and requested taxa to hide.
- root taxon set by default to the root level in speciestree.nwk (previously hard-coded to default to LUCA)

2.0.1

What's Changed
- remove dependency for filehash library
- return better error message if build dependencies are not met, but trying to building an omamer database
- minor fixes
- Bump actions/checkout from 3 to 4 by dependabot in https://github.com/DessimozLab/omamer/pull/24


**Full Changelog**: https://github.com/DessimozLab/omamer/compare/v2.0.0...v2.0.1

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