Omnipath

OmnipathR v1.3.4 (2020-08-04)

+ License and password handling
+ Can be directed to different server by options

OmnipathR v1.3.1 (2020-06-05)

+ Addition of the package website.
+ Modification of the pdf vignette for an html one.
+ Major refactoring of functions.
+ Addition of the intercellular network function.
+ Modification for the intercellular categories.

OmnipathR v1.1.4 (2020-03-28)
+ Refactored the `import_annotations` method

OmnipathR v0.99.12 (2019-10-10)

+ Modification in the separation between genes within a complex (from dash
to underscore)

OmnipathR v0.99.0 (2019-10-10)

+ Submitted to Bioconductor

+ New resource: PrePPI
+ Configuration option to completely disable logging to file
+ New vignettes: Path reconstruction, and Bioconductor 2021 Workshop
+ Many minor bugfixes and improvements

+ NicheNet pipeline works
+ Fixed an error which resulted value 1 in the `n_references` columns
even for records without references

+ Improved quality filtering of intercell networks

+ Improved API for translate_ids
+ Quality filtering of intercell networks

+ Functions to access KEGG Pathways
+ More robust access to UniProt (in case of network failures)