What's Changed * chore: Update dependencies by ghuls in https://github.com/abdenlab/oxbow/pull/63 * feat: Use BufReader for reading BAM files with file-like objects by pkerpedjiev in https://github.com/abdenlab/oxbow/pull/68 * feat(py): Use `BufReader` for `PyFileLikeObject` with 1MB buffer by manzt in https://github.com/abdenlab/oxbow/pull/69 * feat(r): Update `r-oxbow` dependencies and replace deprecated APIs by CGMossa in https://github.com/abdenlab/oxbow/pull/66
New Contributors * ghuls made their first contribution in https://github.com/abdenlab/oxbow/pull/63 * CGMossa made their first contribution in https://github.com/abdenlab/oxbow/pull/66
What's Changed * Simplify GFF/GTF reader types by GarrettNg in https://github.com/abdenlab/oxbow/pull/53 * Fastq file like objects and cleanup by GarrettNg in https://github.com/abdenlab/oxbow/pull/52
- New readers: BigBed, GFF, GTF - File-like object support for readers - BigWig zoom levels for bigwig reader - Bam tags for bam reader - Py-oxbow sphinx docs and tests
0.2.0
New features (rust, python, r)
* Added genomic range query readers for indexed VCF, BCF, as well as FASTA and FASTQ * Support for virtual position-based range queries for indexed BAM, VCF, BCF * Virtual position-based partitioning from index files