Pcg-skel

Added

* Support for metadata and meta-metadata parameters in meshparty. Now the choices made about refining a skeleton and skeletonizing a neuron will be stored in the final skeleton, enabling better control of data provenance.

Changed

* PCGSkel now requires the use of `caveclient` instead of `annotationframeworkclient` as part of a general update to our suite of tools. Please install it via `pip install caveclient` and update your scripts accordingly, using `caveclient.CAVEclient` instead of `annotationframeworkclient.FrameworkClient`. The old client is now depricated, although no further work will go into keeping it functional.

Added

* Get id under point.

Added

* Synapse querying for meshworks can use the live query option.

* Setting `refine="chunk"` in skeleton or mesh creation returns vertices in chunk indices, but only after any potential soma collapse in euclidean coordinates.

Fixed

* Utility function to convert nm to chunk index had plus that should have been a minus.

Fixed

* Small behind the scenes fix to accomidate changes in AnnotationFrameworkClient API.

Added

* Added `chunk_index_mesh` function to download a level 2 object graph with chunk index vertices.

Changed

* `segmentation_fallback` defaults to False, because this method can be very slow.

Fixed

* Force bbox dimensions to be integers, which can happen with non-integer resolutions in cloudvolume.

* `n_parallel = None` now defaults to `parallel = 1` in cloudvolume, avoiding an error.

Fixed

* The segmentation fallback method has been made more robust to level 2 chunk ids with very small supervoxels.

* `nan_rounds` set to `None` is more correctly handled and the warning actually checks to see if any nans are left.