Pensa

Latest version: v0.3.0

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0.3.0

- Major clean-up of the library structure
- Functions not imported by main module anymore, need to import respective submodule.
- Adapted tutorial to new functions
- Hydrogen bonds as features
- Removed dependence on mdtraj, replaced PyEMMA features with MDAnalysis and its other functionality with deeptime.

0.2.8

- uncertainty estimate via blocking
- option to add chain ID to distances

0.2.7

General CSV read/write function for features.

0.2.6

- feature subset selection
- reader for CSV files with DrorMD features
- Bar plots for eigenvalues and PCA correlations

0.2.5

Major additions:

- Metrics that summarize the similarity of two ensembles in one number: `pensa.comparison.metrics`
- A general sorting function: `pensa.preprocessing.coordinates.sort_coordinates()`

0.2.4

Two bugfixes:

- final frame selected in MDA distance reader
- close figure of discrete states after it is saved

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