Peptide-forest

What's Changed
* chore: remove redundant filling of delta empty delta columns, already… by tim-hudelmaier in https://github.com/peptideforest/peptideForest/pull/30
* constant and ordered feature cols by tim-hudelmaier in https://github.com/peptideforest/peptideForest/pull/33
* Update numpy requirement from <1.25.0,>=1.21.5 to >=1.21.5,<1.26.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/31
* Update pytest requirement from <7.4.0,>=6.2.5 to >=6.2.5,<7.5.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/32
* Update scikit-learn requirement from ~=1.2.0 to >=1.2,<1.4 by dependabot in https://github.com/peptideforest/peptideForest/pull/34
* Sampling Targets by tim-hudelmaier in https://github.com/peptideforest/peptideForest/pull/39
* Update numpy requirement from <1.26.0,>=1.21.5 to >=1.21.5,<1.27.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/38
* Update pandas requirement from <2.1.0,>=1.3.5 to >=1.3.5,<2.2.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/37
* Update tqdm requirement from <4.66.0,>=4.62.3 to >=4.62.3,<4.67.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/36
* Add xgboost and fine-tuning capabilities by tim-hudelmaier in https://github.com/peptideforest/peptideForest/pull/35
* update requirements, black by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/44

New Contributors
* tim-hudelmaier made their first contribution in https://github.com/peptideforest/peptideForest/pull/30

**Full Changelog**: https://github.com/peptideforest/peptideForest/compare/v3.0.3...v3.1.0

What's Changed
* workaround for change in pandas 2.0.0 by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/29
* Update loguru requirement from <0.7.0,>=0.5.3 to >=0.5.3,<0.8.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/27
* Update pytest requirement from <7.3.0,>=6.2.5 to >=6.2.5,<7.4.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/28
* Update pandas requirement from <1.6.0,>=1.3.5 to >=1.3.5,<2.1.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/26


**Full Changelog**: https://github.com/peptideforest/peptideForest/compare/v3.0.2...v3.0.3

What's Changed
* Add `raw_data_location` to check_mass_sanity groupby by MKoesters in https://github.com/peptideforest/peptideForest/pull/24
* Update uparma requirement from ~=0.9.14 to >=0.9.14,<1.1.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/25


**Full Changelog**: https://github.com/peptideforest/peptideForest/compare/v3.0.1...v3.0.2

What's Changed
* set file locations based on current file by StSchulze in https://github.com/peptideforest/peptideForest/pull/1
* Local interpretation by fu in https://github.com/peptideforest/peptideForest/pull/2
* mass sanity check by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/4
* Working ursgal2 compatible version of peptide forest by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/5
* improved setup and cleaned up analysis scripts by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/6
* change column names to snake_case by MKoesters in https://github.com/peptideforest/peptideForest/pull/7
* removed deprecated indexing by set by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/8
* Update requirements.txt by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/9
* update_package_config by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/11
* Create dependabot.yml by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/10
* Update tqdm requirement from ~=4.62.3 to >=4.62.3,<4.65.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/12
* Update pandas requirement from ~=1.3.5 to >=1.3.5,<1.6.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/14
* Update pytest requirement from ~=6.2.5 to >=6.2.5,<7.3.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/13
* remove legacy files by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/17
* Update numpy requirement from ~=1.21.5 to >=1.21.5,<1.25.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/15
* Update loguru requirement from ~=0.5.3 to >=0.5.3,<0.7.0 by dependabot in https://github.com/peptideforest/peptideForest/pull/16
* add cd and update ci by tristan-ranff in https://github.com/peptideforest/peptideForest/pull/19

New Contributors
* StSchulze made their first contribution in https://github.com/peptideforest/peptideForest/pull/1
* fu made their first contribution in https://github.com/peptideforest/peptideForest/pull/2
* MKoesters made their first contribution in https://github.com/peptideforest/peptideForest/pull/7
* dependabot made their first contribution in https://github.com/peptideforest/peptideForest/pull/12

**Full Changelog**: https://github.com/peptideforest/peptideForest/commits/v3.0.0