Phables

What's Changed
* Updated environment files

**Full Changelog**: https://github.com/Vini2/phables/compare/v1.3.1...v1.3.2

Please report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).

What's Changed
* You can now add a prefix for your genomes names.
* Updated genome path format in the `resolved_genome_info.txt`. Now the unitigs of the genome are represented as `unitig_name:orientation,unitig_name:orientation,...` where orientation can be `fwd`/`rev`.
* Minor bug fixes

**Full Changelog**: https://github.com/Vini2/phables/compare/v1.3.0...v1.3.1

Please report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).

What's Changed
* Phables can now resolve phage genomes from long-read assemblies.
* You can run Phables on long-read assemblies of phage isolate as well.

**Full Changelog**: https://github.com/Vini2/phables/compare/v1.2.2...v1.3.0

Please report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).

What's Changed
* Resolves linear phage genomes with DTRs.
* Output files are now organised for each processing step.

**Full Changelog**: https://github.com/Vini2/phables/compare/v1.2.1...v1.2.2

Please report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).

What's Changed
* Minor updates to postprocessing rules.
* Minor bug fixes and code refactoring.

**Full Changelog**: https://github.com/Vini2/phables/compare/v1.2.0...v1.2.1

Please report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).

What's Changed
* Now `phables` can recover linear phage genomes from complex linear components.
* Added postprocessing steps for resolved genomes.
* Multi-threading for Gurobi MFD solver.
* Minor bug fixes and code refactoring.

**Full Changelog**: https://github.com/Vini2/phables/compare/v1.1.0...v1.2.0

Please report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).