- Fixes non-verbose execution bug when running phylophlan_assign_sgbs.py (previously phylophlan_metagenomic.py)
3.1
* Phylogenetic pipeline in `phylophlan.py` improved thanks to users' feedback * Taxonomic assignment of genomes and MAGs via `phylophlan_assign_sgbs.py` (previously `phylophlan_metagenomic.py`) improved with databases synced with MetaPhlAn and faster
3.0.3
* Fixing and improving folders check, params in exception, empty MSA check, and input handling * adding the `--convert_N2gap` param
3.0.2
* Downloads now from http://cmprod1.cibio.unitn.it * Added sanity checks for the gene tree pipeline * Added warning message when specifying ASTRAL in the config file generator as it should be manually configured
3.0.1
3.0
See [readme](https://github.com/biobakery/phylophlan/blob/master/readme.md) for more information