Pitools

Latest version: v1.0.1

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1.0.0

pitools的imputation流程整合了Eagle(2.4.1)和Minimac3。其中,Eagle 2.4.1用于完成Pre-phase,而Minimac3 则实现最终的Imputation,往后将提供更多功能模块;
* 处理程序的文档记录问题,通过 Logbook;
* 添加VCF输入文件的合法性检查代码;
* 实现pre-phase process和imputation process的代码分离出来,并在runfunction.imputation中进行调用和判断
* 指定区间或者指定染色体的Phasing和Imputation;
* 应用更好的参数传递和处理规则,并添加对特定 regions 和 phased method的选择功能;
* 完善 README.md 帮助文档;
* 改名才能发布到大牌PyPI......

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