Pjpipe

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- If science lv1 data already exists, just copy it over for background data to save processing time
- Include BMAJ in ``psf_matching_step``
- Auto rotate the WCS in ``level_match_step``
- Fix SIP approximation issues in ``apply_wcs_adjust_step``
- ``astrometric_catalog_step`` can now use either DAOStarFinder or IRAFStarFinder. Observatory recommendations seem
to be IRAFStarFinder in general
- Removed factor of 2 for FWHM in lv3 tweakreg-related steps to more closely match observatory recommendations
- Add lower version pins to project requirements to avoid incompatibilities
- Fixed bug in ``astrometric_align_step`` where file might already be closed before saving
- Updated PHANGS Cycle 1 config to v1p1 (last couple of observations, and a few small changes to the config)
- Fix bug with ``process_bgr_like_science`` in ``lv3_step``
- Added 'filename' option for background association
- Fix in ``parse_fits_to_table`` when there is not a defined observation label
- Point Zenodo DOI to "concept" DOI, rather than latest
- Cleaner labels in ``anchoring_step``
- Add acknowledgment for PCA (thanks Liz!)
- Added CITATION.cff

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- Fix del in ``get_wcs_adjust`` if we skip alignment
- Made plots more consistent and "publication ready" across the board
- Fix bug in ``anchoring step``
- Rename ``anchor_to_external_step.py`` to ``anchor_step.py`` for consistency
- Fix "too many plots open" warning in ``anchoring_step``
- Include useful pjpipe version info in files
- Save anchoring background in metadata properly in ``anchoring_step``
- Add Zenodo badge

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- Fix packaging to minimise file size
- Error in ``pyproject.toml``

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- Added documentation
- Ensure ``multi_tile_destripe_step`` is properly imported in the pipeline
- Remove an error in ``multi_tile_destripe_step`` stripes in stacked image don't align with any particular
axis of the array
- Fix crash where quadrants are turned off in median filtering in ``single_tile_destripe_step``
- Fix potential memory leaks in ``get_wcs_adjust_step`` and ``apply_wcs_adjust_step``
- Diagnostic plots are compressed by default in ``release_step``

===================

- Can specify CRDS context at the pipeline level
- median_filter is now the default in ``single_tile_destripe_step``
- Added fallback for median_filter in ``single_tile_destripe_step`` when too much data is masked
- Remove mask option in median_filter in ``single_tile_destripe_step``, since it's always used
anyway
- Changed up how ``do_large_scale`` works in ``multi_tile_destripe_step``,
which seems significantly improved and simplified
- Added fallback for in ``multi_tile_destripe_step`` when too much data is masked in quadrants
- Changed how tweakreg grouping is done in ``get_wcs_adjust_step`` and ``lv3_step`` to account
for code changes in the pipeline
- Added option to decouple the short NIRCam chips for tweakreg in ``lv3_step``
- Added option to move the various diagnostic plots in ``release_step``
- ``remove_bloat`` is now False by default in ``release step``, to maintain datamodels compatibility
- ``remove_bloat`` also applies to PSF matched files in ``release_step``

===================

- Added PSF modelling routines. These are currently very preliminary, but at least exist
- Allow for external, absolute catalog in ``get_wcs_adjust_step``
- Add PSF matching routines (``psf_matching``)
- Add anchoring routines (``anchoring``)
- Include useful outputs from these in the ``release_step``
- If not grouping dithers in ``get_wcs_adjust_step``, respect that in how the transforms are
written out
- ``single_tile_destripe_step`` can now run on rate files (pre-flat fielding)
- Bugfixing in ``single_tile_destripe_step``
- Decoupled horizontal/vertical destriping methods in ``single_tile_destripe_step``, since the
noise properties are distinct in these two axes
- Add ``smooth`` option to ``single_tile_destripe_step``, based on Dan Coe's smooth1overf
algorithm
- Added control over how values are extended beyond array edge for filtering in ``single_tile_destripe_step``
- Lots of bugfixing in ``multi_tile_destripe_step``
- ``multi_tile_destripe_step`` can un-flat before correcting
- Level between amplifiers in ``multi_tile_destripe_step``
- Make vertical stripe subtraction optional in ``multi_tile_destripe_step``
- Added median option to ``multi_tile_destripe_step`` to do a median rather than mean image
- Added iterative option to ``multi_tile_destripe_step`` that will keep things going until
sigma-based convergence
- Added sigma-clip median option for creating stacked images
- ``do_large_scale`` now works completely differently in ``multi_tile_destripe_step``, instead
attempting to clean up the average image
- Added support for different ``do_large_scale`` methods in ``multi_tile_destripe_step``,
which may work better in certain situations
- Added a median filter ``do_large_scale`` method, which may be more robust than the boxcar. THIS
IS NOW THE DEFAULT
- Added a sigma-clipped ``do_large_scale`` method, as should be optimal in observations that aren't
full of emission
- Added a smooth convolution ``do_large_scale`` method, based on Dan Coe's smooth1overf algorithm
- Added control over how values are extended beyond array edge for ``do_large_scale``
- Added option in ``lv3_step`` to degroup dithers for tweakreg
- Added option in ``lv3_step`` to degroup NIRCam modules, since the WCS is currently inconsistent
between the two
- Fixed crash in ``lv3_step`` if one of the group/degroup parameters is not defined
- Be smarter about keeping track of exposure numbers in ``lv3_step``
- ``regress_against_previous`` will now search for files in priority order, for fallback between versions
- Make sure backgrounds are included in label for ``regress_against_previous``
- f-string fixes