Pori-python

Breaking Changes

- [[KBDEV-1227](https://www.bcgsc.ca/jira/browse/KBDEV-1227)] Signature variants support [#42](https://github.com/bcgsc/pori_python/pull/42)
- [[DEVSU-2550](https://www.bcgsc.ca/jira/browse/DEVSU-2550), [DEVSU-2477](https://www.bcgsc.ca/jira/browse/DEVSU-2477)] Multivariant statements handling [#45](https://github.com/bcgsc/pori_python/pull/45), [#37](https://github.com/bcgsc/pori_python/pull/37)

Improvements

- [[KBDEV-1236](https://www.bcgsc.ca/jira/browse/KBDEV-1236)] Added extra type checking for variant matching [#25](https://github.com/bcgsc/pori_python/pull/25)
- [[DEVSU-2488](https://www.bcgsc.ca/jira/browse/DEVSU-2488)] Move reformatting upstream get_cancer_predisposition_info() [#41](https://github.com/bcgsc/pori_python/pull/41)
- [[DEVSU-2494](https://www.bcgsc.ca/jira/browse/DEVSU-2494)] Add custom text to analysis summary [#44](https://github.com/bcgsc/pori_python/pull/44), [#46](https://github.com/bcgsc/pori_python/pull/46)
- [[SDEV-4409](https://www.bcgsc.ca/jira/browse/SDEV-4409)] Deprecate get_cancer_predisposition_info() & get_pharmacogenomic_info() [#35](https://github.com/bcgsc/pori_python/pull/35)
- Add image to test_upload contents [48](https://github.com/bcgsc/pori_python/pull/48)

Bugfixes

- [[KBDEV-1266](https://www.bcgsc.ca/jira/browse/KBDEV-1266)] Fix redundand disease matching [#47](https://github.com/bcgsc/pori_python/pull/47)
- [[SDEV-4605](https://www.bcgsc.ca/jira/browse/SDEV-4605), [SDEV-4601](https://www.bcgsc.ca/jira/browse/SDEV-4601)] Remove pattern check on chromosomeBand [#43](https://github.com/bcgsc/pori_python/pull/43)
- [[DEVSU-2606](https://www.bcgsc.ca/jira/browse/DEVSU-2606)], Combine chr with chromosomeBand [#53](https://github.com/bcgsc/pori_python/pull/53)

What's Changed
* fix package data by elewis2 in https://github.com/bcgsc/pori_python/pull/32

**Full Changelog**: https://github.com/bcgsc/pori_python/compare/v0.1.1...v0.1.2

What's Changed
* SDEV-4431 - bugfix - content.spec.json not in distribution by dustinbleile in https://github.com/bcgsc/pori_python/pull/26

First release of merged pori_ipr_python and pori_graphkb_python packages as pori_python.

Improvement:

merge pori_ipr_python and pori_graphkb_python adaptors
update test suite for use with external PORI deployments; skip tests that will only work on the BCGSC PORI deployment (where possible, replace with tests on other data)
DEVSU-2348: add function to fetch associated gene list per variant returned by cancer predisposition and pharmacogenomic gene variant functions
DEVSU-2349: add option to load reports by pori-ipr-api reports-async endpoint
SDEV-4409: update gene exclude lists
SDEV-4409: use typing extension > 4.4; remove max version on requests
KBDEV-1231: add test to ensure no incorrect matches to wildtype
Bugfix:

DEVSU-2348: fix test of pharmocogenomic gene list
SDEV-4409: use tqdm for progress bar
SDEV-4431: update mypy types