What's Changed * [Feat] Enhanced MSA Scripts by popfido in https://github.com/bytedance/Protenix/pull/76 * Add the "_entity" field to the output CIF file * Fix typo of USE_DEEPSPEED_EVO_ATTENTION
New Contributors * popfido made their first contribution in https://github.com/bytedance/Protenix/pull/76
What's Changed * Enable precommit by thalahors in https://github.com/bytedance/Protenix/pull/72 * Update the server domain name * Convert MSE to MET in the atom array
What's Changed * Update CONTRIBUTING.md by NinoRisteski in https://github.com/bytedance/Protenix/pull/59 * Create scorecard.yml by willem-bd in https://github.com/bytedance/Protenix/pull/64 * Update deepspeed version to solve vulnerability tips
New Contributors * NinoRisteski made their first contribution in https://github.com/bytedance/Protenix/pull/59 * willem-bd made their first contribution in https://github.com/bytedance/Protenix/pull/64
Changed - Add open-source code for the training data processing pipeline. - Include documentation for the data processing scripts in the docs/prepare. - Add MSA pipeline for generating MSAs for training and inference. - Add local colabfold_search demo to generate Protenix compatible MSA. - Fix MSA post processing bug about the pairing MSA.