Psite-annotation

Latest version: v0.6.0

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0.6.0

- Fix GitHub action artifact up/download version
- Handle multiple flanking sequences in addKinaseLibraryAnnotations (20, 21)
- Hard-code return empty result for empty sequence
- Fix IndexError in get_site_sequence_contenxt (18, 19)
- Re-add uniqueness and sorting as optional features (16, 17)
- Add length check to _score function
- Add parameter to split multiple flanking sequences by ';'
- Throw error for illegal characters in site sequence context
- Preserve order within annotation columns (14, 15)
- Fix bug in trimming (12, 13)
- Implement function to correctly adjust sequence length prior to motif enrichment

0.5.3

- Speed optimizations for kinase library motif analysis
- Add kinase library arguments to functional annotation function
- Support newer numpy and pandas version (11)

0.5.2

- Update kinase_library for pY Motifs (8)
- Improved documentation

0.5.1

- Created readthedocs
- Allow custom dictionary of modifications (7)
- Fix for problematic characters in PSP tables (6)
- Codecov and unit tests with GitHub Actions (5)

0.5.0

- Allow multiple peptide matches per protein in PeptidePositionAnnotator
- Allow for localization uncertainty, Fixes 3
- Sequence context enhancements, Fixes 1
- Allow pandas 2.0
- Add checks for missing input columns

0.4.0

- Added Kinase Library scoring

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