Pybioclip

Latest version: v1.3.2

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1.3.2

What's Changed
* Create tutorial using GBIF list of Hawaiian birds to aid prediction by thompsonmj in https://github.com/Imageomics/pybioclip/pull/86
* Add ommitted geojson example file by thompsonmj in https://github.com/Imageomics/pybioclip/pull/97
* Add Fine-tune Simpleshot example notebook by johnbradley in https://github.com/Imageomics/pybioclip/pull/82
* Require python3.10+ for pybioclip and add matrix based tests with python versions by smenon8 in https://github.com/Imageomics/pybioclip/pull/100
* Fix mkdocs generation - python version by johnbradley in https://github.com/Imageomics/pybioclip/pull/103
* Add comparison of methods to Fine-tune docs by johnbradley in https://github.com/Imageomics/pybioclip/pull/98
* Update version to 1.3.2 by johnbradley in https://github.com/Imageomics/pybioclip/pull/104

New Contributors
* thompsonmj made their first contribution in https://github.com/Imageomics/pybioclip/pull/86
* smenon8 made their first contribution in https://github.com/Imageomics/pybioclip/pull/100

**Full Changelog**: https://github.com/Imageomics/pybioclip/compare/1.3.1...1.3.2

1.3.1

What's Changed
* Fix commit url for 1.3.0 by johnbradley in https://github.com/Imageomics/pybioclip/pull/90
* Use apptainer 1.3.6 for container building by johnbradley in https://github.com/Imageomics/pybioclip/pull/92
* Fix pil batching bug by johnbradley in https://github.com/Imageomics/pybioclip/pull/94
* Update version to 1.3.1 by johnbradley in https://github.com/Imageomics/pybioclip/pull/95


**Full Changelog**: https://github.com/Imageomics/pybioclip/compare/1.3.0...1.3.1

1.3.0

What's Changed
* Fix .zenodo.json and add test by johnbradley in https://github.com/Imageomics/pybioclip/pull/75
* Add Fine-tune SVM example notebook by johnbradley in https://github.com/Imageomics/pybioclip/pull/78
* Add Fine-tune RidgeClassifier example notebook by johnbradley in https://github.com/Imageomics/pybioclip/pull/79
* Fix grouping performance bug by johnbradley in https://github.com/Imageomics/pybioclip/pull/85
* Add batch_size parameter for predict() and cli by johnbradley in https://github.com/Imageomics/pybioclip/pull/83
* Fix subsetting range bug by johnbradley in https://github.com/Imageomics/pybioclip/pull/88
* Create version 1.3.0 by johnbradley in https://github.com/Imageomics/pybioclip/pull/89


**Full Changelog**: https://github.com/Imageomics/pybioclip/compare/1.2.0...1.3.0

1.2.0

What's Changed
* Create publish-to-pypi.yml by johnbradley in https://github.com/Imageomics/pybioclip/pull/48
* Fix .zenodo.json by johnbradley in https://github.com/Imageomics/pybioclip/pull/51
* Citation 1.1.0 by johnbradley in https://github.com/Imageomics/pybioclip/pull/49
* Add binning to custom label prediction by johnbradley in https://github.com/Imageomics/pybioclip/pull/53
* Allow using PIL with predict functions by johnbradley in https://github.com/Imageomics/pybioclip/pull/55
* Allow subsetting TOL classifier by johnbradley in https://github.com/Imageomics/pybioclip/pull/59
* Add mkdocs documentation by johnbradley in https://github.com/Imageomics/pybioclip/pull/66
* Add changes to work better with pytorch-grad-cam by johnbradley in https://github.com/Imageomics/pybioclip/pull/64
* Improve Acknowledgments by johnbradley in https://github.com/Imageomics/pybioclip/pull/70
* Add --subset argument to predict command by johnbradley in https://github.com/Imageomics/pybioclip/pull/63
* Improve Docker and Acknowledgments Documentation by johnbradley in https://github.com/Imageomics/pybioclip/pull/72
* Create version 1.2.0 by johnbradley in https://github.com/Imageomics/pybioclip/pull/73


**Full Changelog**: https://github.com/Imageomics/pybioclip/compare/1.1.0...1.2.0

1.1.0

What's Changed
* Update notebooks pip commands by johnbradley in https://github.com/Imageomics/pybioclip/pull/22
* Makes synopsis in the README more descriptive by hlapp in https://github.com/Imageomics/pybioclip/pull/24
* Allows specifying top k results for custom class list by hlapp in https://github.com/Imageomics/pybioclip/pull/31
* Adds ability to provide other OpenCLIP models and checkpoints by hlapp in https://github.com/Imageomics/pybioclip/pull/33
* Create CITATION.cff by johnbradley in https://github.com/Imageomics/pybioclip/pull/25
* Add automated testing config by johnbradley in https://github.com/Imageomics/pybioclip/pull/36
* Add --cls-file to predict command by johnbradley in https://github.com/Imageomics/pybioclip/pull/37
* Enable torch.load weights_only=True by johnbradley in https://github.com/Imageomics/pybioclip/pull/38
* Adds Dockerfile + release container building by johnbradley in https://github.com/Imageomics/pybioclip/pull/40
* Add README link to custom model documentation by johnbradley in https://github.com/Imageomics/pybioclip/pull/42
* Add apptainer support by johnbradley in https://github.com/Imageomics/pybioclip/pull/41
* Update container README links and fix Apptainer push by johnbradley in https://github.com/Imageomics/pybioclip/pull/44
* Update version to 1.1.0 by johnbradley in https://github.com/Imageomics/pybioclip/pull/46


**Full Changelog**: https://github.com/Imageomics/pybioclip/compare/1.0.0...1.1.0

1.0.0

What's Changed
* Add bioclip command line tool by johnbradley in https://github.com/Imageomics/pybioclip/pull/3
* Improve performance and prediction results by johnbradley in https://github.com/Imageomics/pybioclip/pull/8
* Add device parameter and examples by johnbradley in https://github.com/Imageomics/pybioclip/pull/9
* Add embed command by johnbradley in https://github.com/Imageomics/pybioclip/pull/10
* Fix for RGBA png files by johnbradley in https://github.com/Imageomics/pybioclip/pull/13
* Avoid recomputing text embeddings for custom labels by johnbradley in https://github.com/Imageomics/pybioclip/pull/16
* Allow batch processing of images by johnbradley in https://github.com/Imageomics/pybioclip/pull/18
* Prep to release on pypi by johnbradley in https://github.com/Imageomics/pybioclip/pull/19
* Fixes badges to use the correct package name by hlapp in https://github.com/Imageomics/pybioclip/pull/21

**Full Changelog**: https://github.com/Imageomics/pybioclip/commits/1.0.0

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