Pyfastani

Latest version: v0.6.0

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0.6.0

Changed
- Rewrite package build using `scikit-build-core`.
- Update documentation to use the PyData theme.
- Bump embedded `cpu-features` library to `v0.9.0`.

Added
- Support for Python 3.13.

Fixed
- Null pointer dereference in FASTA parser deallocation.

Removed
- Support for Python 3.6.

0.5.1

Added
- Pre-compiled wheels for Python 3.12 and PyPy 3.10.

Fixed
- Use NEON and SSE2 unconditionally on platforms where they are available by default.

0.5.0

Changed
- Bump Cython dependency to `v3.0`.

Fixed
- Add missing signature of `Sketch.index` to type stubs.
- PyPy builds failing on missing `PyInterpreterState_GetID` function.

0.4.1

Changed
- Use lists instead of arrays to store state of `Minimizers` when pickling.
- Skip serialization of minimizer index to reduce total state size.
- Make `Mapper.query_draft` and `Mapper.query_genome` return hits sorted by identity in descending order.

0.4.0

Added
- Multi-threaded computation of fragment mapping in `Mapper.query_draft` and `Mapper.query_genome`.

Fixed
- NEON-specific compile flags in `setup.py` for Aarch64 target platforms.
- Broken compilation for Arm platforms because of missing header guards.

0.3.1

Added
- Slightly improve documentation in some classes.
- Sphinx documentation for the project hosted on ReadTheDocs.
- Links and instructions to install package from the Bioconda channel.

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