Pyleoclim

This release fixes some bugs and introduces revamped APIs for the `spectral` and `wavelet` functions.

What's Changed
* updating cross spectral branch by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/572
* Global coherence by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/573
* Freq argument for wavelet-based methods by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/580
* edgecolor fix by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/582
* Depth nans by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/584
* ensemble functionality fixes + log scaling by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/586
* Map paleo ensemble array by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/587
* Legend bug by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/588
* Edgecolor fix again by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/589
* EnsembleSeries display by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/591
* Archive graphics by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/593
* Stackplot yticks by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/595
* Fix ensembleseries doc build failure by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/596
* MulEnsGeoSeries stackplot by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/599
* remove errant print statements by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/601
* fix typo in if statement in coherence.plot by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/603
* Fix problems with graphics by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/604
* Fix a bug in series.py that was preventing values to be assigned correctly when changing the time axis by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/606
* release info for v1.1.0 by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/607


**Full Changelog**: https://github.com/LinkedEarth/Pyleoclim_util/compare/v1.0.0...v1.1.0

Inaugural release of Pyleoclim 1.0.0, introducing new classes, functionalities, and many changes to the API.
Of note:
- generalized surrogates
- MC-PCA
- GeoSeries
- independence from the LiPD utilities

What's Changed
* Added `auto_time_params` to GeoSeries to make it consistent with Series by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/523
* Update README.md by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/526
* Include MLE estimation of tau_0 and sigma_2 by lionelvoirol in https://github.com/LinkedEarth/Pyleoclim_util/pull/524
* Multiple resolution by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/527
* Generalized surrogates by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/530
* uar1 surrogates by lionelvoirol in https://github.com/LinkedEarth/Pyleoclim_util/pull/534
* uar1 surrogates by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/537
* Random time axis by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/539
* Mapping legend colorbar by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/525
* Updates to spectral() behavior by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/540
* Colored noise by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/541
* Ensemblegeoseries + MCPCA by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/542
* allow colored_noise to output normalized series and use it to generat… by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/543
* Surrogate bug fixes by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/545
* Surrogate bug fixes, number =1 by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/546
* include np.squeeze in series init by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/548
* coerced signif to boolean and removed extraneous print() statement by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/550
* Remove traces of LiPD by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/551
* New class docs by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/553
* Cmap fix by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/555
* Update geoseries.py by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/557
* fix pylipd query by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/558
* edgecolor fix for map_neighbors by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/559
* Doc fixes format by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/560
* fix .query by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/561
* Doc fixes format by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/562
* fixed import in plotting example by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/563
* another get_cmap fix by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/564
* Docstring fixes by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/565
* Update rtd_env.yml by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/566
* pin all python versions to 3.11.0 by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/567
* Update .readthedocs.yaml by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/568
* Mcpca doc by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/570
* tick version by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/571

New Contributors
* lionelvoirol made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/524

**Full Changelog**: https://github.com/LinkedEarth/Pyleoclim_util/compare/v0.14.0...v1.0.0

This release addresses a number of bugs and introduces feature relating to visualization, outlier detection, quantile calculations.

What's Changed
* Modeplot pc units by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/449
* Alleviating the dependency conflict between scipy and cartopy by fzhu2e in https://github.com/LinkedEarth/Pyleoclim_util/pull/451
* update to Python 3.10 by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/453
* replaced lambda^2 by lambda by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/455
* Try another RTD envt by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/456
* made code more robust to uq options by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/460
* gkernel e folding scale default param fix by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/465
* Fix link in `Series` docstring by qianxyz in https://github.com/LinkedEarth/Pyleoclim_util/pull/468
* LOF implementation for outlier detection using Kmeans by Aragath in https://github.com/LinkedEarth/Pyleoclim_util/pull/474
* Update test_core_EnsembleSeries.py by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/471
* add auto_time_params arg to series init by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/472
* Update metadata.yml by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/482
* Fix permil encoding by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/487
* Update series.py by neillinehan in https://github.com/LinkedEarth/Pyleoclim_util/pull/485
* Update plotting.py documentation by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/490
* Pip install by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/481
* Update .readthedocs.yml by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/489
* change to read the docs build by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/492
* Update rtd_env.yml by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/493
* Documentation by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/495
* doc fix? maybe by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/496
* Update .readthedocs.yaml by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/497
* Update rtd_env.yml by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/498
* Custom frequency parameters by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/494
* Coherence time axis by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/501
* time coverage plots by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/500
* updated sphinx-search extension version by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/505
* enabling LiPD controlled vocabulary for archiveType by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/504
* fix spacing for time_coverage_plot examples by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/506
* Update contribution_guide.rst by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/508
* quantiles calculations by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/507
* Plotting utilities to support interval highlighting with labels by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/509
* Fix archivetype and other mapping by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/510
* Scipy failure -> pyhht integration into pyleoclim by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/515
* Fix for failing documentation on read the docs by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/517
* fix plot_legend arg in ens.plot_envelope by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/520
* fix plot_legend for psds by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/521
* Fixes the disappeared matplotlib style + doc fixes by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/518
* Release of the code base by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/522

New Contributors
* qianxyz made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/468
* Aragath made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/474
* neillinehan made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/485

**Full Changelog**: https://github.com/LinkedEarth/Pyleoclim_util/compare/v0.13.0...v0.14.0

This version introduces 2 new classes, GeoSeries & MultipleGeoSeries, which parallel Series and MultipleSeries, respectively.
GeoSeries is the more general substitute for LiPDSeries, which will be deprecated soon.
Both classes enable new mapping capabilities, supported by `seaborn` to allow semantics that leverage shape, color and size to represent multivariate information in space. MultipleGeoSeries allows [geolocated principal component analysis](http://linked.earth/PyleoTutorials/notebooks/L2_principal_component_analysis.html).
This release also includes minor bug fixes, particularly on the handling of time metadata.

What's Changed
* update gkernel and bin warning message triggers by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/403
* Detrend thindoc by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/406
* Merge the newly created geoseries.py and associated class by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/407
* enabling json loading of GeoSeries by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/409
* Update test_core_Series.py by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/412
* fixed series.ssa(): RCk length mismatch in docstring by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/415
* remove extraneous data from data folder by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/410
* multiple, ensemble, psd docstring verbose=False by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/416
* series docstring typos by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/417
* update append and append docstring by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/418
* Rich geoseries by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/420
* first pass at map_all function for multiple geoseries by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/424
* Docs jupyter execute by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/423
* Doc fixes by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/425
* Multivar decomp by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/428
* Map overhaul by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/435
* Map configurability by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/437
* Modeplot map by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/439
* fixed geoseries.dashboard gridspec and docstring by jordanplanders in https://github.com/LinkedEarth/Pyleoclim_util/pull/440
* Map neighbors by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/441
* GeoSeries.segment() method by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/436
* Res class update by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/444
* Year bp fix by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/445


**Full Changelog**: https://github.com/LinkedEarth/Pyleoclim_util/compare/v0.12.0...v0.13.0

What's Changed
* fix gkernel by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/393
* Create resolution class by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/394
* Lipd and LipdSeries deprecation warnings by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/397
* Stripe fix by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/398
* updated warning messages by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/399


**Full Changelog**: https://github.com/LinkedEarth/Pyleoclim_util/compare/v0.11.0...v0.12.0

This releases integrated Pyleoclim with Pandasv2.0 which extends datetime indices to the geologic timescale.

What's Changed
* WIP stub out pandas roundtrip by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/289
* add tests for changes in tsutils by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/297
* add load_dataset methods by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/301
* Add extra index to pip install by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/306
* Update enviroment by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/307
* New obj bug fixes by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/309
* Fixup TestUISeriesConvertTimeUnit tests by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/310
* 294 utils bugfix 2 by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/314
* Enable json loading into Series both from a user dataset and an example json by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/311
* implement pyleo.Series.resample by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/303
* reshuffling code to solve 299 by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/318
* update version syntax by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/319
* Remove stray print statement in load_datasets by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/323
* Covariance regularization by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/321
* Bin gkernel alignment by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/322
* Csv roundtrip by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/324
* Update environment.yml to use jupyterhub 3+ by consideRatio in https://github.com/LinkedEarth/Pyleoclim_util/pull/327
* added HadCRUT5 dataset by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/328
* add test for resampling over long periods by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/329
* validate reso in convert_datetime_index, fixup fixture; by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/332
* use UDUNITS seconds_per_year by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/333
* add overload to add to append to multipleseries by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/336
* add MultipleSeries.to_pandas by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/335
* Add sel method by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/339
* add remove and __sub__ methods by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/337
* Sorting hat by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/344
* Add some doc strings by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/342
* update bin and gkernel documentation by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/347
* Update environment, use new env in ci by kcpevey in https://github.com/LinkedEarth/Pyleoclim_util/pull/343
* Ssa knee by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/345
* Make time axis by alexkjames in https://github.com/LinkedEarth/Pyleoclim_util/pull/348
* Add use_common_time argument to MultipleSeries.to_pandas by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/350
* Resample: use year-start as rule by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/351
* clean up to_pandas by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/353
* use __add__ to combine multipleseries by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/354
* Let .sel take tolerance for datetime or str time by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/349
* Add __add__ overload for creating MultipleSeries from Series by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/352
* added segment number to labels by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/356
* Allow for non-pyleo rules in resample by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/355
* fixed init log handling by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/358
* Update metadata.yml by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/362
* Convert time units by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/364
* Add examples of overloads by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/363
* convert_time_unit prior to plotting by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/366
* Deal with the logs by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/367
* Preserve direction in resample by MarcoGorelli in https://github.com/LinkedEarth/Pyleoclim_util/pull/365
* EPICA Dome C deuterium record by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/370
* silent series creation by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/371
* shifted index to midpoint by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/369
* outliers docstring + tests by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/372
* MS display by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/374
* enable export to and from json for MS by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/376
* enable .sel in MS by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/375
* Thin env by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/377
* MultipleSeries to csv by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/373
* Merge development into master to only keep the master branch by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/379
* Update tsutils.py by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/381
* removing lat/lon by khider in https://github.com/LinkedEarth/Pyleoclim_util/pull/383
* first stab at package data folder by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/384
* replaced remote csv loading by load_datasets() by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/385
* Install instructions by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/388
* Silent sorting by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/390
* path variable in from_csv by CommonClimate in https://github.com/LinkedEarth/Pyleoclim_util/pull/391

New Contributors
* MarcoGorelli made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/289
* kcpevey made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/297
* consideRatio made their first contribution in https://github.com/LinkedEarth/Pyleoclim_util/pull/327

**Full Changelog**: https://github.com/LinkedEarth/Pyleoclim_util/compare/v0.10.0...v0.11.0