Pyopia

What's Changed
* Pypi workflow by emlynjdavies in https://github.com/SINTEF/pyopia/pull/147
* 146 separate classification module from standard dependencies by emlynjdavies in https://github.com/SINTEF/pyopia/pull/149
* move citation.cff to root directory by emlynjdavies in https://github.com/SINTEF/pyopia/pull/151
* update readthedocs-sphinx-search by emlynjdavies in https://github.com/SINTEF/pyopia/pull/153
* Added missing factor 255 in converting from float to int by nordam in https://github.com/SINTEF/pyopia/pull/155
* 163 Guide for running steps manually by emlynjdavies in https://github.com/SINTEF/pyopia/pull/167
* make reconstruction kernel inclusive of upper limit z plane by klarrieu in https://github.com/SINTEF/pyopia/pull/162
* Classifier debugging by emlynjdavies in https://github.com/SINTEF/pyopia/pull/168
* move exampledata.py to pyopia module level by emlynjdavies in https://github.com/SINTEF/pyopia/pull/171
* 182 test for classification by emlynjdavies in https://github.com/SINTEF/pyopia/pull/185
* 189 xarray formatting of netcdf data causes error if first images have no particles by emlynjdavies in https://github.com/SINTEF/pyopia/pull/190
* 186 pyopiacli not working for raw files updates by emlynjdavies in https://github.com/SINTEF/pyopia/pull/194
* 192 Pass minimum_area to segmentation function by nepstad in https://github.com/SINTEF/pyopia/pull/195
* implement option to not append STATS.nc files by emlynjdavies in https://github.com/SINTEF/pyopia/pull/193
* 198 pyopiastatisticsmake timeseries vd makes dataframe with times upside down oldest first newest last by emlynjdavies in https://github.com/SINTEF/pyopia/pull/206
* Version 2.0.0 by emlynjdavies in https://github.com/SINTEF/pyopia/pull/214
* Update pypi.yml by emlynjdavies in https://github.com/SINTEF/pyopia/pull/236
* update scikit image by emlynjdavies in https://github.com/SINTEF/pyopia/pull/239
* move classify import out of cli and into pipeline by emlynjdavies in https://github.com/SINTEF/pyopia/pull/247
* add guide on processing raw data by emlynjdavies in https://github.com/SINTEF/pyopia/pull/249

New Contributors
* nordam made their first contribution in https://github.com/SINTEF/pyopia/pull/155
* klarrieu made their first contribution in https://github.com/SINTEF/pyopia/pull/162

**Full Changelog**: https://github.com/SINTEF/pyopia/compare/v1.0.0...v2.0.3

PyOPIA now uses a steps dictionary based on a [toml](https://toml.io/en/) [configuration file](https://github.com/SINTEF/pyopia/blob/116-improve-output-data-formatting/notebooks/config.toml), and saving STATS to nc (instead of h5). It is now possible to re-evaluate to re-run the analysis, based soles on the metadata contained in the STATS .nc files:
[notebooks/single-image-stats.ipynb](https://github.com/SINTEF/pyopia/blob/116-improve-output-data-formatting/notebooks/single-image-stats.ipynb)

Other completed issues updated in this version:
- fixes 133
- fixes 96
- fixes 65
- fixes 139
- fixes 134

Last version 0

**Full Changelog**: https://github.com/SINTEF/pyopia/compare/v0.0.51-pre-alpha...v0.0.58-alpha