Pyrelational

What's Changed
* Use local environment for pre-commit by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/146
* Readthedoc build fix & single-source of requirements by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/140
* Update pandas requirement from <2.2.1,>=1.3.0 to >=1.3.0,<2.2.2 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/141
* Bump pytest from 8.0.0 to 8.1.1 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/145
* Update scikit-learn requirement from <1.2.2,>=1.0.2 to >=1.0.2,<1.4.2 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/142
* Update version.py by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/149
* Bump black from 24.2.0 to 24.3.0 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/143
* Update pandas requirement from <2.2.2,>=1.3.0 to >=1.3.0,<2.2.3 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/150
* Update scikit-learn requirement from <1.4.2,>=1.0.2 to >=1.0.2,<1.4.3 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/148
* Bump mypy from 1.8 to 1.9.0 in /requirements by dependabot in https://github.com/RelationRx/pyrelational/pull/144


**Full Changelog**: https://github.com/RelationRx/pyrelational/compare/v1.0.1...v1.0.2

What's Changed

* Fix for compatibility with new versions of pytorch lightning that remove support for the `gpus` argument by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/112
* Fix bugs in examples and simplify imports to remove need to temper with PYTHONPATH by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/113
* Update lightning requirement from <2.1.0,>=1.8.6 to >=1.8.6,<2.3.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/114
* Update numpy requirement from <1.24.3,>=1.22.0 to >=1.22.0,<1.26.5 by dependabot in https://github.com/RelationRx/pyrelational/pull/115
* Bump flake8 from 6.0.0 to 7.0.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/117
* Update torch requirement from <1.14.0,>=1.9.0 to >=1.9.0,<2.3.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/116
* Update pandas requirement from <1.5.4,>=1.3.0 to >=1.3.0,<2.2.1 by dependabot in https://github.com/RelationRx/pyrelational/pull/120
* Update gpytorch requirement from <1.10.0,>=1.4.0 to >=1.4.0,<1.12.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/118
* Bump black from 22.12.0 to 24.2.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/121
* Bump pytest from 7.2.1 to 8.0.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/123
* Bump parameterized from 0.8.1 to 0.9.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/125
* Bump flake8-bugbear from 23.1.20 to 24.2.6 by dependabot in https://github.com/RelationRx/pyrelational/pull/124
* Update torchvision requirement from <0.15.0,>=0.10.0 to >=0.10.0,<0.18.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/126


**Full Changelog**: https://github.com/RelationRx/pyrelational/compare/v1.0.0...v1.0.1

In this new release, we introduce significant changes to the overall framework by adding a clear separation between pipeline management and active learning strategy. The latter is now only responsible for query selection, while the former is now handled by a specific Pipeline class responsible for interfacing the now four components of the active learning loop:
- the data manager,
- the model manager,
- the active learning strategy, or simply strategy,
- the oracle

We also add a template class for oracles such that users can design and connect their own to PyRelationAL pipeline. By default, the pipeline will use a BenchmarkOracle which assumes the dataset contains all the labels already.

The new release introduces a few syntactic changes such as renaming of classes and methods, to make the syntax lighter and/or more consistent across the library, as well as a refactor of the unit test suite to improve clarity.

See below for a full list of changes and fixes.

What's Changed
* bug fix due to new scipy versions removing scipy.random by ojpb in https://github.com/RelationRx/pyrelational/pull/11
* Shuffling labelled set by ojpb in https://github.com/RelationRx/pyrelational/pull/18
* Fixes to badge example by alicerdv in https://github.com/RelationRx/pyrelational/pull/15
* Add missing Doc strings by alicerdv in https://github.com/RelationRx/pyrelational/pull/20
* Moving the call function of models to a specific device by alicerdv in https://github.com/RelationRx/pyrelational/pull/17
* Automate codecov by RelationTherapeutics in https://github.com/RelationRx/pyrelational/pull/21
* dependabot update requirements.txt by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/22
* Changing resolution of train/test/validation indices in datamanager. And make data manager mypy compliant by ojpb in https://github.com/RelationRx/pyrelational/pull/19
* Refactor unit tests by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/40
* Update torch requirement from <=1.13.0,>=1.9.0 to >=1.9.0,<1.14.0 by dependabot in https://github.com/RelationRx/pyrelational/pull/43
* AL-Pipeline by paulmorio in https://github.com/RelationRx/pyrelational/pull/33
* Renaming Classes by a-pouplin in https://github.com/RelationRx/pyrelational/pull/51
* Updated examples by paulmorio in https://github.com/RelationRx/pyrelational/pull/54
* Refactor RelativeDistanceStrategy by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/59
* Refactor how labelling history is stored by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/58
* Readme update by paulmorio in https://github.com/RelationRx/pyrelational/pull/64
* Adding mypy to pre-commit by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/65
* Notebooks updated by a-pouplin in https://github.com/RelationRx/pyrelational/pull/63
* Refactor regression informativeness/strategies by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/78
* Change regression_greedy_score name to regression_mean_prediction by alicerdv in https://github.com/RelationRx/pyrelational/pull/82
* Change module names and change naming to reflect change from model to model manager by alicerdv in https://github.com/RelationRx/pyrelational/pull/79
* Current model reset by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/83
* Rename methods by a-pouplin in https://github.com/RelationRx/pyrelational/pull/85
* Add label attr input to data manager by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/86
* Documentation update by alicerdv in https://github.com/RelationRx/pyrelational/pull/80
* Updated Readme with new image and deprecated older images by paulmorio in https://github.com/RelationRx/pyrelational/pull/88

New Contributors
* ojpb made their first contribution in https://github.com/RelationRx/pyrelational/pull/11
* alicerdv made their first contribution in https://github.com/RelationRx/pyrelational/pull/15
* a-pouplin made their first contribution in https://github.com/RelationRx/pyrelational/pull/51

**Full Changelog**: https://github.com/RelationRx/pyrelational/compare/v0.1.6...v1.0.0

What's Changed
* Datasets for benchmarking strategies by paulmorio in https://github.com/RelationRx/pyrelational/pull/8

**Full Changelog**: https://github.com/RelationRx/pyrelational/compare/v0.1.5...v0.1.6

What's Changed
* Adding hit ratio metric by thomasgaudelet in https://github.com/RelationRx/pyrelational/pull/7


**Full Changelog**: https://github.com/RelationRx/pyrelational/compare/v0.1.4...v0.1.5

What's Changed

**Full Changelog**: https://github.com/RelationRx/pyrelational/compare/v0.1.3...v0.1.4