Pyrodigal-gv

Added
- `stdin` and `formatter_class` flags to `pyrodigal_gv.cli.main` as introduced in latest Pyrodigal version.

Changed
- Update `pyrodigal` dependency to `v3.5.1`.

Fixed
- Inconsistent behaviour introduced by 868bd18ad121ad59489f76da031c0cebc29ff53a ([apcamargo/genomad56](https://github.com/apcamargo/genomad/issues/56)).

Added
- Command line interface based off the `pyrodigal` CLI.

Fixed
- Avoid storing all-zero motif weights in `meta.json` file.

Changed
- Update `pyrodigal` dependency version to `v3.2.1`.

Added
- `min_mask` argument to `ViralGeneFinder` to control the minimum lenght of masked regions on `mask=True`.
- Explicit support for Python 3.12.

Changed
- `pyrodigal` dependency version to `v3.1`.

Initial release.