Pytom-match-pick

Code should still be identical to 0.7.4, but the release workflow has been changed to hopefully be more robust

What's Changed
* Restructure release by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/242


**Full Changelog**: https://github.com/SBC-Utrecht/pytom-match-pick/compare/0.7.8...0.7.9

Here we go again...

Major updates
* pytom_match_template.py now supports relion5 metadata input via the `--relion5-tomograms-star` option. You can provide a tomograms.star file from a tomogram reconstruction job and pytom-match-pick will fetch the necessary CTF and dose data by the tomogram id.
* Some small fixes were also made to relion5-style star file particle list to make reading back easier.

PR's
* deal with new ruff version and next try for tutorial-test.yml by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/224
* Update tutorial-tests.yml by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/225
* Get tutorial-tests.yml working by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/226
* Add bins option to both the tophat and extraction plot by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/227
* add check on input gpu indices by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/228
* Drop py 39 and upgrade by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/230
* Relion5 input by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/229


**Full Changelog**: https://github.com/SBC-Utrecht/pytom-match-pick/compare/0.7.2...0.7.4

Major changes
* We have a site! (It's automatically deployed with changes to the main branch)
* The tomogram mask supplied to match_template can now be ignored upon extraction to prevent unnecessary recalculation.
* After some initial issues, reading of starfiles by RELION5 should be fixed when using relion5-compat mode in extract_candidates.
* Score maps can be written out in float16 mode to save some disk space.
* Defocus handedness can be specified in match_template and will calculate defocus offsets for each subvolume. The site got a new 'Benchmarks' tab where a post is added that illustrates the effects of specifying defocus handedness ([check it out here](https://sbc-utrecht.github.io/pytom-match-pick/benchmarks/defocus_handedness/)).

PR overview
* fix defocus help unit by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/197
* mkdocs site for pytom-match-pick by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/199
* fix: strings signs in deploy docs workflow by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/203
* Update README.md by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/202
* update workflow permission to write github pages by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/204
* Update Developers.md by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/205
* Add ignore tomo mask option by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/209
* add check on tomo mask shape by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/210
* site updates: fix some usage informations, make authorship clear, add logo by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/212
* add E501 check by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/216
* Create CITATION.cff by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/218
* Fix relion5 compat by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/220
* logging.warn will be deprecated by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/223
* add comment to entry_points that tells developers not to use line bre… by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/219
* feature: calculate subvolume defocus values by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/217
* Enable 16 bit output by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/222


**Full Changelog**: https://github.com/SBC-Utrecht/pytom-match-pick/compare/0.7.1...0.7.2

What's Changed
* Add DOI badge to readme.md by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/186
* add tutorial test yml by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/187
* Update pyproject.toml by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/188
* fix: make output directories for tutorial tests by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/189
* revert healpix workaround by sroet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/193
* bug fix: add int type for rng seed by McHaillet in https://github.com/SBC-Utrecht/pytom-match-pick/pull/192


**Full Changelog**: https://github.com/SBC-Utrecht/pytom-match-pick/compare/0.7.0...0.7.1