Quantms-rescoring

What's Changed
- Improve logging
- multithreads
- remove decoy flags
- default similarity threshold from 0.8 -> 0.7

by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/20


**Full Changelog**: https://github.com/bigbio/quantms-rescoring/compare/v0.0.6...v0.0.7

What's Changed
* Removed parameter score direction and obtain it from idXML by daichengxin in https://github.com/bigbio/quantms-rescoring/pull/17
* removed printed pyopenms warning by daichengxin in https://github.com/bigbio/quantms-rescoring/pull/19
* major patch for ms2pip to use pyopenms instad of ms2rescore-rs by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/18


**Full Changelog**: https://github.com/bigbio/quantms-rescoring/compare/v0.0.5...v0.0.6

What's Changed
* [PLEASE DO NOT MERGE] Major changes in the ms2rescore by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/10
* update test by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/11
* Dev by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/12
* Dev by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/13
* fixing pyopenms were retrieving dissociation matrices by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/14
* Enhance mzML Handling: Unix Compatibility Checks, Theoretical Spectra, MS2PIP Improvements & Coverage Reporting by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/15
* improve in converting ppm errors to Da tolerances. by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/16


**Full Changelog**: https://github.com/bigbio/quantms-rescoring/compare/v0.0.4...v0.0.5

What's Changed
* fixed empty spectra bugs by daichengxin in https://github.com/bigbio/quantms-rescoring/pull/8
* Bug fixing by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/9


**Full Changelog**: https://github.com/bigbio/quantms-rescoring/compare/v0.0.3...v0.0.4

What's Changed
* fixed bugs by daichengxin in https://github.com/bigbio/quantms-rescoring/pull/5
* fixed bugs for invalid psm by daichengxin in https://github.com/bigbio/quantms-rescoring/pull/6
* major changes about PSMs bugs. by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/7

New Contributors
* daichengxin made their first contribution in https://github.com/bigbio/quantms-rescoring/pull/5

**Full Changelog**: https://github.com/bigbio/quantms-rescoring/compare/v0.0.2...v0.0.3

What's Changed
* Dev by ypriverol in https://github.com/bigbio/quantms-rescoring/pull/4
* ms2rescore psms index fixed issues https://github.com/bigbio/quantms/issues/458


**Full Changelog**: https://github.com/bigbio/quantms-rescoring/compare/v0.0.1...v0.0.2