Rnapysoforms

Added
- Correction to make the legend for expression match the order of the expression boxes.

Added
- to_intron now automatically calculates exon number if it is not already present.
- shorten_gaps now automatically calculates exon_number if it is not already present.
- Adressed issue reported on https://github.com/UK-SBCoA-EbbertLab/RNApysoforms/issues/6#issuecomment-2719061461, improving generalizability of the shorten gaps function
- Improved documentation for read_ensembl_gtf()

Added
- Increase infer_schema_length when reading counts matrix to avoid type errors.

Added
- Changed make_traces() function to avoid transparent dots on the legend.
- Improved documentation for read_ensembl_gtf() function.
- Improved documentation for read_expression_matrix() function.
- Improved formatting on the vignettes.
- Improved README.md file.

Removed
- Kaleido dependency. Kaleido now requires chrome/chromium to be installed which could complicate the installation.

Added
- Changed intron coordinates to be consistent with GTF format (1-index based, inclusive on both sides)
- Changed make traces function to make sure introns and exon/CDS "touch" in the plot even though their GTF coordinates do not touch.