Roiextractors

Fixes

* The triggering workflow name for update version was incorrectly set to `auto-publish` (the name of the yaml file). It has been renamed to `Upload Package to PyPI` (the name field of the workflow): [PR 304](https://github.com/catalystneuro/roiextractors/pull/304).

* Fixed bug with automatic changelog test that was causing it to fail for daily tests: [PR 310](https://github.com/catalystneuro/roiextractors/pull/310)

* Updated zenodo to get a DOI on each release: No PR

Features

* Add support to get background components: add `get_background_ids()`, `get_background_image_masks()`, `get_background_pixel_masks()` to `SegmentationExtractor`. [PR 291](https://github.com/catalystneuro/roiextractors/pull/291)

* Add distinction for raw roi response and denoised roi response in `CaimanSegmentationExtractor`: [PR 291](https://github.com/catalystneuro/roiextractors/pull/291)

* Bug fix for the `CaimanSegmentationExtractor`: correctly extract temporal and spatial background components [PR 291](https://github.com/catalystneuro/roiextractors/pull/291)

* Added automatic version update workflow file that will run after publishing a new release to pypi: [PR 290](https://github.com/catalystneuro/roiextractors/pull/290)

* Added `ScanImageTiffSinglePlaneMultiFileImagingExtractor` and `ScanImageTiffMultiPlaneMultiFileImagingExtractor`: [PR 297](https://github.com/catalystneuro/roiextractors/pull/297/files)

* Added automatic changelog checking in the test workflow: [PR 302](https://github.com/catalystneuro/roiextractors/pull/302)

Fixes

* Improved xml parsing with Bruker [PR 267](https://github.com/catalystneuro/roiextractors/pull/267)

* Fixed a bug with `ScanImageTiffSinglePlaneImagingExtractor` in which `frames_per_slice` would be set to `_num_frames`: [PR 294](https://github.com/catalystneuro/roiextractors/pull/294)

Features

* Added support for red channel (anatomical) ROIs from suite2p in Suite2pSegmentationExtractor: [PR 270](https://github.com/catalystneuro/roiextractors/pull/270)

* Added support for RoiGroup metadata in the `extract_extra_metadata` function for ScanImageTiff files: [PR 272](https://github.com/catalystneuro/roiextractors/pull/272)

* Updated documentation and Readme PRs: [283](https://github.com/catalystneuro/roiextractors/pull/283) [#282](https://github.com/catalystneuro/roiextractors/pull/282) [#280](https://github.com/catalystneuro/roiextractors/pull/280)

Features

* Updated `Suite2pSegmentationExtractor` to support multi channel and multi plane data. [PR 242](https://github.com/catalystneuro/roiextractors/pull/242)

Fixes

* Fixed `MicroManagerTiffImagingExtractor` private extractor's dtype to not override the parent's dtype. [PR 257](https://github.com/catalystneuro/roiextractors/pull/257)
* Fixed override of `channel_name` in `Suite2pSegmentationExtractor`. [PR 263](https://github.com/catalystneuro/roiextractors/pull/263)

Features

* Added volumetric and multi-channel support for Bruker format. [PR 230](https://github.com/catalystneuro/roiextractors/pull/230)

Features

* Added support for Miniscope AVI files with the `MiniscopeImagingExtractor`. [PR 225](https://github.com/catalystneuro/roiextractors/pull/225)

* Added support for incomplete file ingestion for the `Suite2pSegmentationExtractor`. [PR 227](https://github.com/catalystneuro/roiextractors/pull/227)

* Bug fix for the `CaimanSegmentationExtractor`: Change reshaping from 'C' to 'F' (Fortran). [PR 227](https://github.com/catalystneuro/roiextractors/pull/227)

* Bug fix for the `CaimanSegmentationExtractor`: Added importing of `self._image_correlation` and changed how `self._image_mean` to import the background component image. [PR 227](https://github.com/catalystneuro/roiextractors/pull/227)